Protein–RNA interactions for Protein: O54788

Dffb, DNA fragmentation factor subunit beta, mousemouse

Known RBP Predictions only

Length 344 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DffbO54788 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
DffbO54788 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
DffbO54788 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
DffbO54788 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
DffbO54788 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC13.83□□□□□ -0.19
DffbO54788 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
DffbO54788 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
DffbO54788 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Ntrk2-205ENSMUST00000224402 2284 ntBASIC13.83□□□□□ -0.2
DffbO54788 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC13.83□□□□□ -0.2
DffbO54788 Gm21814-202ENSMUST00000203277 873 ntBASIC13.83□□□□□ -0.2
DffbO54788 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC13.83□□□□□ -0.2
DffbO54788 AC159205.3-201ENSMUST00000224614 874 ntBASIC13.83□□□□□ -0.2
DffbO54788 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC13.83□□□□□ -0.2
DffbO54788 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DffbO54788 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
DffbO54788 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
DffbO54788 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC13.82□□□□□ -0.2
DffbO54788 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC13.82□□□□□ -0.2
DffbO54788 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC13.82□□□□□ -0.2
DffbO54788 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC13.82□□□□□ -0.2
DffbO54788 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC13.82□□□□□ -0.2
DffbO54788 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
DffbO54788 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Zfp264-201ENSMUST00000208656 1563 ntBASIC13.82□□□□□ -0.2
DffbO54788 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
DffbO54788 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC13.82□□□□□ -0.2
DffbO54788 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
DffbO54788 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DffbO54788 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
DffbO54788 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 AC153526.5-201ENSMUST00000218661 2147 ntBASIC13.81□□□□□ -0.2
DffbO54788 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC13.81□□□□□ -0.2
DffbO54788 Mir5122-201ENSMUST00000175004 89 ntBASIC13.81□□□□□ -0.2
DffbO54788 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC13.81□□□□□ -0.2
DffbO54788 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
DffbO54788 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
DffbO54788 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
DffbO54788 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DffbO54788 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms