Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm15565-201ENSMUST00000118890 427 ntBASIC17.3■□□□□ 0.36
Nr1i3O35627 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.3■□□□□ 0.36
Nr1i3O35627 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Asic1-205ENSMUST00000228185 1818 ntBASIC17.3■□□□□ 0.36
Nr1i3O35627 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
Nr1i3O35627 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Nr1i3O35627 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.29■□□□□ 0.36
Nr1i3O35627 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.29■□□□□ 0.36
Nr1i3O35627 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.29■□□□□ 0.36
Nr1i3O35627 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Nr1i3O35627 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Nr1i3O35627 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.29■□□□□ 0.36
Nr1i3O35627 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Nr1i3O35627 Gm18032-201ENSMUST00000222541 538 ntBASIC17.29■□□□□ 0.36
Nr1i3O35627 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Nr1i3O35627 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1i3O35627 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nr1i3O35627 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nr1i3O35627 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
Nr1i3O35627 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Nr1i3O35627 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Nr1i3O35627 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Nr1i3O35627 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Nr1i3O35627 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1i3O35627 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.27■□□□□ 0.36
Nr1i3O35627 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.27■□□□□ 0.36
Nr1i3O35627 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Nr1i3O35627 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nr1i3O35627 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Nr1i3O35627 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
Nr1i3O35627 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Nr1i3O35627 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Nr1i3O35627 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Nr1i3O35627 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.27■□□□□ 0.35
Nr1i3O35627 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Nr1i3O35627 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nr1i3O35627 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nr1i3O35627 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nr1i3O35627 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nr1i3O35627 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nr1i3O35627 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nr1i3O35627 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.26■□□□□ 0.35
Nr1i3O35627 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Nr1i3O35627 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms