Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-215P-201ENST00000365169 102 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.353-201ENST00000365440 108 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.361-201ENST00000365515 120 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.420-201ENST00000384043 110 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 SNORA48.5-201ENST00000391143 135 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 RNU7-23P-201ENST00000459465 62 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 MIR4425-201ENST00000580572 84 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CHMP3Q9Y3E7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.09□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-44P-201ENST00000384045 107 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 Y_RNA.456-201ENST00000384232 111 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 RNU1-57P-201ENST00000384491 166 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 Y_RNA.542-201ENST00000384641 111 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 MIR616-201ENST00000385293 97 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-750P-201ENST00000390946 107 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 RNA5SP252-201ENST00000391131 119 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 RNA5SP38-201ENST00000410750 119 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 Z92545.1-201ENST00000411782 234 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 CENPBD1P1-201ENST00000464061 469 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 AC005000.2-201ENST00000605468 310 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 uc_338.1-201ENST00000612113 180 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 AC069528.2-201ENST00000624849 1991 ntBASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHMP3Q9Y3E7 ZNF702P-202ENST00000434269 1966 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 Y_RNA.124-201ENST00000363339 93 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-1205P-201ENST00000363625 106 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 U3.8-201ENST00000363675 217 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-407P-201ENST00000365280 104 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AL121914.1-201ENST00000450188 156 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AC025754.2-201ENST00000606491 432 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AF117829.1-206ENST00000621883 3802 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 PWAR6-201ENST00000552334 4618 ntBASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP3Q9Y3E7 AC017071.1-201ENST00000564407 2204 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-199P-201ENST00000362954 107 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 Y_RNA.229-201ENST00000364347 113 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 SNORD116-14-201ENST00000383894 92 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 SNORD116-17-201ENST00000383929 92 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 SNORD116-15-201ENST00000384445 92 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 SNORD116-19-201ENST00000384729 92 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 MIR526A2-201ENST00000390198 65 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-383P-201ENST00000410864 94 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 RNU7-197P-201ENST00000458836 62 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 AP002884.2-201ENST00000471647 395 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 AC112693.2-201ENST00000556538 232 ntBASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CHMP3Q9Y3E7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 RNY1P11-201ENST00000363759 113 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-1305P-201ENST00000364353 104 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 Y_RNA.337-201ENST00000365312 102 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 AC074290.1-201ENST00000448883 135 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 RPS4XP2-201ENST00000458402 793 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 RN7SL863P-201ENST00000462370 296 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 RMST_8.1-201ENST00000610287 165 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 AC012640.5-201ENST00000623897 319 ntBASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP3Q9Y3E7 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 U8.7-201ENST00000364940 136 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AP002088.1-201ENST00000382740 395 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 MIR15B-201ENST00000385045 98 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AL606845.1-201ENST00000404881 255 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AL365496.1-201ENST00000426885 215 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 RN7SL330P-201ENST00000469709 307 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 KRTAP13-6P-201ENST00000508999 371 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 MIR2276-201ENST00000516886 89 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AL359881.1-201ENST00000602916 267 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AL391903.3-201ENST00000612158 163 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 AL162274.2-201ENST00000614406 332 ntBASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.04□□□□□ -1.76
CHMP3Q9Y3E7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms