Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-1019P-201ENST00000364424 107 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 MIR517C-201ENST00000385103 95 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 RNU6-510P-201ENST00000391239 108 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AL356776.1-201ENST00000406574 447 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 RNU4-62P-201ENST00000410125 130 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 RNU2-7P-201ENST00000410794 178 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 EBAG9P1-201ENST00000418955 543 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AL139396.1-201ENST00000421137 167 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 HMGN1P13-201ENST00000505795 138 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AC018710.1-201ENST00000506509 158 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 RNU6-358P-201ENST00000516564 75 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 RNU6-58P-201ENST00000517143 103 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 HSBP1P1-201ENST00000555205 166 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AC015720.1-201ENST00000565251 277 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 MIR5696-201ENST00000578474 85 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AC010615.1-201ENST00000594254 1764 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 AL353149.1-201ENST00000610667 244 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 uc_338.5-201ENST00000611839 155 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 MIR8074-201ENST00000615081 81 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.319-201ENST00000365138 92 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 RNU6-439P-201ENST00000384188 106 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 RNU6-842P-201ENST00000384269 107 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 RNU6-541P-201ENST00000384709 110 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 SNORA67.6-201ENST00000391093 99 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 MIR934-201ENST00000401241 83 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AL117342.1-201ENST00000404861 406 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.599-201ENST00000410489 109 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC243428.1-201ENST00000421099 264 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 RNU7-57P-201ENST00000459540 60 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 MTND5P5-201ENST00000503764 376 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC025465.3-201ENST00000510570 311 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC060780.3-201ENST00000589464 80 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC126177.8-201ENST00000618339 1015 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AL078596.1-201ENST00000624856 447 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.52□□□□□ -2.17
LHX3Q9UBR4 AC068205.3-201ENST00000636385 468 ntBASIC1.52□□□□□ -2.17
LHX3Q9UBR4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
LHX3Q9UBR4 MIR424-201ENST00000362227 98 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RNU6-137P-201ENST00000363680 108 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RNU6-596P-201ENST00000365395 98 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 SNORA67.2-201ENST00000384300 149 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 MIR548F5-201ENST00000408421 86 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RNU6-174P-201ENST00000410406 106 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 CST2P1-201ENST00000425770 87 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 MTCO3P29-201ENST00000432119 779 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AC245047.4-201ENST00000433189 144 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RPL36AP21-201ENST00000490372 323 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RNU6-1146P-201ENST00000516282 102 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 SNORA25.14-201ENST00000516481 132 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AC084364.2-201ENST00000546924 395 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AC027288.2-201ENST00000553028 243 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 UBL5P4-201ENST00000562584 236 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AC011712.1-201ENST00000588959 234 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AP000942.3-201ENST00000603702 160 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 SNORD11B-201ENST00000607707 90 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AC092794.1-201ENST00000612734 582 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 U6atac.1-201ENST00000616025 117 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 AC008873.1-201ENST00000625051 138 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.51□□□□□ -2.17
LHX3Q9UBR4 MIR338-201ENST00000636369 67 ntBASIC1.51□□□□□ -2.17
LHX3Q9UBR4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.51□□□□□ -2.17
LHX3Q9UBR4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
LHX3Q9UBR4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
LHX3Q9UBR4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.51□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.140-201ENST00000363474 103 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 RNU6-414P-201ENST00000363705 104 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 RNU6-873P-201ENST00000363833 107 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.505-201ENST00000384489 102 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 MIR320A-201ENST00000385302 82 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 RNU6-360P-201ENST00000390944 104 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 RNU6-57P-201ENST00000411348 103 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.5□□□□□ -2.17
LHX3Q9UBR4 MTND3P8-201ENST00000412909 339 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.5□□□□□ -2.17
LHX3Q9UBR4 AL354695.1-201ENST00000427935 228 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 HSPE1P9-201ENST00000440046 311 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 SNORD5.1-201ENST00000458800 75 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.5□□□□□ -2.17
LHX3Q9UBR4 AC016925.2-201ENST00000605108 242 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 AC006001.4-201ENST00000622243 395 ntBASIC1.5□□□□□ -2.17
LHX3Q9UBR4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
LHX3Q9UBR4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.5□□□□□ -2.17
LHX3Q9UBR4 snoU2-30.2-201ENST00000362805 70 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 RNU6-727P-201ENST00000363592 107 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms