Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 MIR32-201ENST00000384965 70 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 MRPL35P1-201ENST00000404272 572 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 MTCO3P18-201ENST00000440206 761 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 MTCO2P7-201ENST00000446518 666 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 RNU7-95P-201ENST00000459222 64 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-498P-201ENST00000459468 107 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 RNU7-66P-201ENST00000459469 62 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 HMGN2P26-201ENST00000463169 339 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 OR2A41P-201ENST00000473586 105 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 AC024909.2-201ENST00000553035 286 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 AC073413.2-201ENST00000604332 360 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 AL138726.1-201ENST00000614873 333 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 AC048344.4-201ENST00000619744 527 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 AC024614.3-201ENST00000637860 256 ntBASIC1.02□□□□□ -2.25
EXOSC4Q9NPD3 MTND4P5-201ENST00000435821 1374 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 snoU2-30.2-201ENST00000362805 70 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNY3P3-201ENST00000363816 102 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 SNORD87-201ENST00000364849 89 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-128P-201ENST00000383976 107 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 MIR586-201ENST00000385035 97 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 MIR513A1-201ENST00000385138 129 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNA5SP504-201ENST00000410676 117 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AC016909.1-201ENST00000415916 166 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RPS29P28-201ENST00000446439 141 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AC114982.1-201ENST00000469402 321 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 MTCO2P30-201ENST00000503662 364 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AC103851.1-201ENST00000506833 274 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNU2-34P-201ENST00000516534 121 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-506P-201ENST00000516553 94 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-256P-201ENST00000516747 97 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 RNA5SP481-201ENST00000516814 122 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AL353149.1-201ENST00000610667 244 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AL157834.3-201ENST00000615543 103 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 AC006504.8-201ENST00000621046 635 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 MIR1321-201ENST00000637766 79 ntBASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
EXOSC4Q9NPD3 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-727P-201ENST00000363592 107 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 MIR517A-201ENST00000385001 87 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 MIR618-201ENST00000385287 98 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 RNA5SP109-201ENST00000391010 116 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 MIR1253-201ENST00000408273 105 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 MRPL35P3-201ENST00000421557 364 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AC108667.1-201ENST00000428618 249 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AL606517.2-201ENST00000442855 241 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 snoU13.27-201ENST00000459278 104 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-273P-201ENST00000516937 96 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 MTND1P5-201ENST00000517906 940 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 CYP3A52P-201ENST00000563326 91 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 MIR4742-201ENST00000581069 85 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 POLR3GP2-201ENST00000588366 668 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 DLEU2_5.1-201ENST00000615567 84 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AL353770.2-201ENST00000620024 78 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 AL078596.1-201ENST00000624856 447 ntBASIC1□□□□□ -2.25
EXOSC4Q9NPD3 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1□□□□□ -2.25
EXOSC4Q9NPD3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 Y_RNA.436-201ENST00000384097 102 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-306P-201ENST00000384617 107 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 Y_RNA.554-201ENST00000384672 102 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 MIR194-1-201ENST00000384892 85 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 RPL30P16-201ENST00000419341 429 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 EIF1P1-201ENST00000421436 341 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AC010154.1-201ENST00000425857 269 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AC005002.2-201ENST00000438228 269 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 Z83846.1-201ENST00000446798 265 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AL163195.1-201ENST00000496941 348 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 HMGN1P12-201ENST00000499125 195 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-58P-201ENST00000517143 103 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AL442163.3-201ENST00000554110 156 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 UBL5P4-201ENST00000562584 236 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 MIR3937-201ENST00000580135 106 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 MIR3942-201ENST00000585264 109 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AC019193.3-201ENST00000609144 554 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 snoZ196.1-201ENST00000625269 89 ntBASIC0.99□□□□□ -2.25
EXOSC4Q9NPD3 Y_RNA.100-201ENST00000363141 102 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 RNA5SP99-201ENST00000364020 114 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 Y_RNA.212-201ENST00000364177 102 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 SNORA22-201ENST00000383907 134 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms