Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
USP28Q96RU2 ZNF702P-202ENST00000434269 1966 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
USP28Q96RU2 MTND5P16-201ENST00000460269 1703 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 Y_RNA.128-201ENST00000363391 112 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 RNU4-42P-201ENST00000364738 142 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 MIR95-201ENST00000385072 81 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 SNORA40.19-201ENST00000390846 128 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 AC004866.1-201ENST00000411748 78 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 MCFD2P1-201ENST00000417812 300 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 AL035666.1-201ENST00000446195 348 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 RNU6-965P-201ENST00000516721 96 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 Y_RNA.711-201ENST00000516993 102 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 RN7SKP295-201ENST00000517264 153 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.98□□□□□ -2.09
USP28Q96RU2 AC026271.5-201ENST00000577873 130 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 MIR3618-201ENST00000580330 88 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 AC092447.9-201ENST00000603395 144 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 CYP2C61P-201ENST00000604072 290 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 SNORD58B-201ENST00000607313 66 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 AC100812.1-201ENST00000607622 580 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 AC006157.1-201ENST00000611750 366 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 AC005520.5-201ENST00000613926 164 ntBASIC1.98□□□□□ -2.09
USP28Q96RU2 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
USP28Q96RU2 SNORD32B-201ENST00000364460 84 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RNU4-56P-201ENST00000364700 142 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 Y_RNA.319-201ENST00000365138 92 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 Y_RNA.358-201ENST00000365491 99 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 Y_RNA.428-201ENST00000384078 102 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RNU6-708P-201ENST00000384217 107 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 MTND4P19-201ENST00000446659 478 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 AL163540.1-201ENST00000485382 386 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RNA5SP182-201ENST00000516064 82 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RNU4-77P-201ENST00000516692 156 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RNU2-44P-201ENST00000516795 194 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 Y_RNA.706-201ENST00000516933 99 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RNU6-58P-201ENST00000517143 103 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 SNORD116.3-201ENST00000517176 78 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 AL353621.2-201ENST00000605340 133 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 RMST_6.1-201ENST00000611980 203 ntBASIC1.97□□□□□ -2.09
USP28Q96RU2 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.97□□□□□ -2.09
USP28Q96RU2 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.97□□□□□ -2.09
USP28Q96RU2 ZNF204P-201ENST00000416749 2397 ntBASIC1.96□□□□□ -2.09
USP28Q96RU2 RNA5SP276-201ENST00000362580 94 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 SNORA25B-201ENST00000365507 128 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 RNU6-1011P-201ENST00000384668 107 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 Y_RNA.557-201ENST00000384680 107 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR10B-201ENST00000385011 110 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR153-2-201ENST00000385225 87 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 RNA5SP213-201ENST00000391031 106 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 SNORA40.18-201ENST00000391200 128 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR1302-11-201ENST00000408051 138 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR1302-9-201ENST00000408365 138 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR1302-10-201ENST00000408734 138 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 RPS26P42-201ENST00000413485 326 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 AC007098.1-201ENST00000420122 367 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 AC005534.2-201ENST00000431047 433 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.96□□□□□ -2.1
USP28Q96RU2 SNORA59A-201ENST00000459326 152 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 UBL5P3-201ENST00000475112 231 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 RNU6-567P-201ENST00000516746 107 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 EIF4A1P12-201ENST00000551910 141 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.96□□□□□ -2.1
USP28Q96RU2 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.96□□□□□ -2.1
USP28Q96RU2 AC090517.1-201ENST00000569307 266 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR4299-201ENST00000577899 72 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR1302-2-201ENST00000607096 138 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 AC040896.1-201ENST00000613819 479 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 MIR4272-201ENST00000635924 64 ntBASIC1.96□□□□□ -2.1
USP28Q96RU2 RNA5SP361-201ENST00000362686 118 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 SNORD114-1-201ENST00000362705 72 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 U3.9-201ENST00000363823 204 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 RNU6-873P-201ENST00000363833 107 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 Y_RNA.326-201ENST00000365176 113 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 Y_RNA.364-201ENST00000365532 101 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 SNORA18.2-201ENST00000383865 132 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 RNU6-541P-201ENST00000384709 110 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 MIR29B2-201ENST00000385055 81 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 Y_RNA.592-201ENST00000410274 109 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AC099799.1-201ENST00000439809 192 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.95□□□□□ -2.1
USP28Q96RU2 RPL23AP6-201ENST00000446637 472 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.95□□□□□ -2.1
USP28Q96RU2 MTCO3P8-201ENST00000453691 755 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.95□□□□□ -2.1
USP28Q96RU2 TRBV12-1-201ENST00000479785 344 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AC018868.1-201ENST00000491307 315 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 RNU6-1137P-201ENST00000517073 99 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AC034114.1-201ENST00000520293 285 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.95□□□□□ -2.1
USP28Q96RU2 MIR5695-201ENST00000579717 85 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AC125232.2-201ENST00000592457 143 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 7SK.7-201ENST00000603504 247 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AC022202.1-201ENST00000613515 211 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 AC007742.2-201ENST00000618226 398 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 MIR1248-201ENST00000629190 106 ntBASIC1.95□□□□□ -2.1
USP28Q96RU2 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP28Q96RU2 AC091812.1-201ENST00000432235 1948 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms