Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC090572.1-201ENST00000519251 160 ntBASIC0.08□□□□□ -2.4
CCDC42Q96M95 AP003716.2-201ENST00000528260 108 ntBASIC0.08□□□□□ -2.4
CCDC42Q96M95 PCMTD1P2-201ENST00000565017 355 ntBASIC0.08□□□□□ -2.4
CCDC42Q96M95 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.08□□□□□ -2.4
CCDC42Q96M95 AL390237.1-201ENST00000404226 1415 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.07□□□□□ -2.4
CCDC42Q96M95 RNU6-501P-201ENST00000364072 100 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 RNU6-42P-201ENST00000384165 107 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 RNU6-83P-201ENST00000384568 112 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 RNU1-139P-201ENST00000391307 165 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 RNA5SP511-201ENST00000410487 115 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 AL663109.1-201ENST00000411498 844 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 EPS15P1-201ENST00000448836 336 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 RNU7-12P-201ENST00000516030 62 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.07□□□□□ -2.4
CCDC42Q96M95 MTCO3P23-201ENST00000561363 289 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 MIR4775-201ENST00000581168 75 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.07□□□□□ -2.4
CCDC42Q96M95 AL049777.1-201ENST00000622740 518 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 AC004808.1-201ENST00000627671 721 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 MIR924-201ENST00000638017 53 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 AC099654.13-201ENST00000639774 207 ntBASIC0.07□□□□□ -2.4
CCDC42Q96M95 MIR103A2-201ENST00000362154 78 ntBASIC0.06□□□□□ -2.4
CCDC42Q96M95 SNORD70.1-201ENST00000391007 85 ntBASIC0.06□□□□□ -2.4
CCDC42Q96M95 AL365184.2-201ENST00000431139 435 ntBASIC0.06□□□□□ -2.4
CCDC42Q96M95 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC42Q96M95 RNU6-344P-201ENST00000516635 111 ntBASIC0.06□□□□□ -2.4
CCDC42Q96M95 AC069113.1-201ENST00000517763 267 ntBASIC0.06□□□□□ -2.4
CCDC42Q96M95 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC42Q96M95 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC42Q96M95 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.05□□□□□ -2.4
CCDC42Q96M95 RNU6-1200P-201ENST00000384162 107 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 SNORD105-201ENST00000386910 85 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 MIR454-201ENST00000390180 115 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AL355143.1-201ENST00000407101 841 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 RNA5SP494-201ENST00000410653 129 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AC084290.1-201ENST00000434995 374 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 MTCO2P3-201ENST00000442543 421 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AC105313.1-201ENST00000509121 353 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 RNU7-28P-201ENST00000516759 62 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 RNU6-410P-201ENST00000517006 107 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 MIR3941-201ENST00000582572 103 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AL117336.2-201ENST00000602435 335 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AP000811.1-201ENST00000603803 651 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AC018714.1-201ENST00000605028 208 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 AC100812.1-201ENST00000607622 580 ntBASIC0.05□□□□□ -2.4
CCDC42Q96M95 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.05□□□□□ -2.4
CCDC42Q96M95 Y_RNA.265-201ENST00000364677 108 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.04□□□□□ -2.4
CCDC42Q96M95 USP9YP29-201ENST00000445112 563 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.04□□□□□ -2.4
CCDC42Q96M95 RNU7-182P-201ENST00000459009 62 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AP000870.1-201ENST00000472927 406 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.04□□□□□ -2.4
CCDC42Q96M95 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.04□□□□□ -2.4
CCDC42Q96M95 AGGF1P4-201ENST00000568249 801 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 MIR4431-201ENST00000579990 94 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 7SK.7-201ENST00000603504 247 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AC091304.9-201ENST00000612091 226 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AC122133.1-201ENST00000613964 233 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 AC139792.3-201ENST00000623525 224 ntBASIC0.04□□□□□ -2.4
CCDC42Q96M95 MIR320B2-201ENST00000408479 138 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 MIR1827-201ENST00000408549 66 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 RNU2-70P-201ENST00000410718 179 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 AC104850.1-201ENST00000435940 476 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.03□□□□□ -2.4
CCDC42Q96M95 AC079781.2-201ENST00000446424 169 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC42Q96M95 RNA5SP436-201ENST00000516020 115 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 RNU6-430P-201ENST00000517078 107 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 RNA5SP454-201ENST00000517231 127 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 AC022878.1-201ENST00000530684 149 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 BNIP3P39-201ENST00000601077 554 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 AC112191.3-201ENST00000604371 277 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 RNU6-94P-201ENST00000607728 107 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 uc_338.11-201ENST00000619132 160 ntBASIC0.03□□□□□ -2.4
CCDC42Q96M95 RNU6-227P-201ENST00000362865 103 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 SNORD114-23-201ENST00000363536 72 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 RNU6-1127P-201ENST00000384580 107 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 RNA5SP219-201ENST00000390940 113 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 SNORD111-201ENST00000408139 94 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 MIR1185-1-201ENST00000408598 86 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC42Q96M95 SNORD27.1-201ENST00000516319 72 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 RNU6-612P-201ENST00000516909 102 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 MIR4999-201ENST00000585029 91 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 SCARNA4-201ENST00000629045 128 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 SEPT14P19-203ENST00000633205 211 ntBASIC0.02□□□□□ -2.41
CCDC42Q96M95 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
CCDC42Q96M95 MIR103A1-201ENST00000362165 78 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 RNU6-1286P-201ENST00000383871 107 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 RNU6-1029P-201ENST00000384109 107 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 RNY1P14-201ENST00000384426 108 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 MIR526A1-201ENST00000384897 85 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC42Q96M95 RPL31P35-201ENST00000431058 377 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC42Q96M95 RPS29P27-201ENST00000463711 170 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 279.6 ms