Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.18□□□□□ -2.22
NUDCD3Q8IVD9 AC099654.12-201ENST00000639868 649 ntBASIC1.18□□□□□ -2.22
NUDCD3Q8IVD9 MTND5P35-201ENST00000557537 1720 ntBASIC1.18□□□□□ -2.22
NUDCD3Q8IVD9 RNU6-534P-201ENST00000364877 106 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 MIR515-2-201ENST00000384883 83 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 MIR515-1-201ENST00000384884 83 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 MIR1253-201ENST00000408273 105 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 RNU4-62P-201ENST00000410125 130 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 AC004965.1-201ENST00000413033 213 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 AC009474.2-201ENST00000451383 136 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 MTND1P11-201ENST00000456661 876 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 HMGN2P26-201ENST00000463169 339 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 MTCO2P30-201ENST00000503662 364 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 MTND1P5-201ENST00000517906 940 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 snoZ196.1-201ENST00000625269 89 ntBASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.17□□□□□ -2.22
NUDCD3Q8IVD9 SNORD33-201ENST00000362761 85 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 Y_RNA.256-201ENST00000364594 104 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 Y_RNA.559-201ENST00000384686 107 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 MIR32-201ENST00000384965 70 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 RNA5SP109-201ENST00000391010 116 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 RNU6-482P-201ENST00000391068 107 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 AL591704.2-201ENST00000421658 181 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 AC108667.1-201ENST00000428618 249 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 MTCO3P18-201ENST00000440206 761 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 MTND1P1-201ENST00000445453 368 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 RNU7-34P-201ENST00000459394 64 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 HMGN1P12-201ENST00000499125 195 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 AC025647.1-201ENST00000517879 253 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 AC023043.2-201ENST00000589678 1026 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 AC103591.3-201ENST00000608684 209 ntBASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
NUDCD3Q8IVD9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 Y_RNA.38-201ENST00000362617 102 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 RNU6-451P-201ENST00000362921 107 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 SNORD115-8-201ENST00000363856 82 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 SNORD115-38-201ENST00000365037 82 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 MIR618-201ENST00000385287 98 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 RNA5SP323-201ENST00000391094 133 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AL445305.1-201ENST00000432577 575 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 RNU7-66P-201ENST00000459469 62 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 RPL30P7-201ENST00000479312 323 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AL163195.1-201ENST00000496941 348 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 RNA5SP54-201ENST00000516951 92 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AL442163.3-201ENST00000554110 156 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 MIR4421-201ENST00000578133 69 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 POLR3GP2-201ENST00000588366 668 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AC073413.2-201ENST00000604332 360 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 SNORD11B-201ENST00000607707 90 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AL365434.2-201ENST00000607979 234 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AL138726.1-201ENST00000614873 333 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 AC006504.8-201ENST00000621046 635 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.15□□□□□ -2.23
NUDCD3Q8IVD9 RNY3P3-201ENST00000363816 102 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 RNU4-9P-201ENST00000364951 139 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 MIR517A-201ENST00000385001 87 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 MIR513A1-201ENST00000385138 129 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 RPL21P1-201ENST00000399532 476 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 EIF1P1-201ENST00000421436 341 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 AL606517.2-201ENST00000442855 241 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 RNU6-221P-201ENST00000459541 99 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 RPS26P45-201ENST00000471748 340 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 AL133373.1-201ENST00000497098 94 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 TRBVA-201ENST00000498804 316 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 RNU6-58P-201ENST00000517143 103 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 AC024995.1-201ENST00000523014 93 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 RAB11AP2-201ENST00000545905 639 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
NUDCD3Q8IVD9 SNORA7.1-201ENST00000363750 139 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 SNORD115-32-201ENST00000364079 82 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 SNORD87-201ENST00000364849 89 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 RNU6-245P-201ENST00000384020 107 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 Y_RNA.530-201ENST00000384587 101 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 AC008134.1-201ENST00000420943 193 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 MRPL35P3-201ENST00000421557 364 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 DAP3P1-201ENST00000441522 278 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 RPS29P28-201ENST00000446439 141 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 RPS27P1-201ENST00000450552 247 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 AC103851.1-201ENST00000506833 274 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 SNORA25.14-201ENST00000516481 132 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 RNU6-256P-201ENST00000516747 97 ntBASIC1.13□□□□□ -2.23
NUDCD3Q8IVD9 RNA5SP454-201ENST00000517231 127 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 161.3 ms