Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC106754.1-201ENST00000562632 1513 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 RNU6-190P-201ENST00000384154 102 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 RNU6-1122P-201ENST00000384449 107 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 MIR499A-201ENST00000384903 122 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 RNU6-278P-201ENST00000390945 109 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 MLLT10P1-201ENST00000418346 262 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 MTCO2P23-201ENST00000425216 680 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 USP9YP11-201ENST00000427537 717 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 SUMO1P2-201ENST00000452524 304 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 SNORA14.1-201ENST00000516113 141 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 MIR2115-201ENST00000516657 100 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AC022616.3-201ENST00000523940 148 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AC012433.1-201ENST00000588916 398 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AC010999.1-201ENST00000611856 324 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 RN7SL660P-201ENST00000614852 299 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AC240442.1-201ENST00000616055 283 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 AL008636.1-201ENST00000625038 1018 ntBASIC-1.23□□□□□ -2.61
LINC00643Q86TS7 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 SNORD51.1-201ENST00000365405 77 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 SNORA26.3-201ENST00000391119 136 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AC078809.1-201ENST00000427601 140 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 PAXBP1P1-201ENST00000449315 447 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AC007215.1-201ENST00000464893 276 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 RNU7-99P-201ENST00000516271 62 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AP001372.4-201ENST00000524889 472 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 DEFB108A-201ENST00000530110 222 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AL442067.1-201ENST00000613261 223 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 AC099654.8-201ENST00000637757 681 ntBASIC-1.24□□□□□ -2.61
LINC00643Q86TS7 RNU6-853P-201ENST00000364306 107 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 Y_RNA.393-201ENST00000383936 102 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AL355143.1-201ENST00000407101 841 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AC013470.1-201ENST00000453438 462 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AL049829.1-201ENST00000465411 156 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AC007751.1-201ENST00000529260 376 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 MIR3152-201ENST00000579801 74 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 AC097478.2-201ENST00000610572 514 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 MIR6514-201ENST00000622549 70 ntBASIC-1.25□□□□□ -2.61
LINC00643Q86TS7 MIRLET7C-201ENST00000362160 84 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 MIR101-1-201ENST00000362265 75 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 RNU4-9P-201ENST00000364951 139 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 MIR938-201ENST00000401216 83 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 AC090960.1-201ENST00000421072 306 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 MTND1P4-201ENST00000435196 415 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 AC074290.1-201ENST00000448883 135 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 RNU7-28P-201ENST00000516759 62 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 RNA5SP330-201ENST00000517096 96 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 SNORA74.3-201ENST00000517108 154 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 AP002453.2-201ENST00000533503 320 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 AC174048.1-201ENST00000603389 144 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 AL139286.2-201ENST00000606838 396 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 AC005592.1-201ENST00000566527 1640 ntBASIC-1.26□□□□□ -2.61
LINC00643Q86TS7 SNORD114-14-201ENST00000362723 75 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 RNU6-105P-201ENST00000363909 104 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 RNU6-1240P-201ENST00000365155 104 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 RNY1P14-201ENST00000384426 108 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 RNU6-1179P-201ENST00000384667 107 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 SNORA8.3-201ENST00000384679 139 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 MIR208B-201ENST00000401172 77 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 AC008134.1-201ENST00000420943 193 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 MTCO1P5-201ENST00000433573 344 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 AP001180.6-201ENST00000584918 159 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 AC020891.4-201ENST00000605745 93 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 AC091304.9-201ENST00000612091 226 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 AC005520.5-201ENST00000613926 164 ntBASIC-1.27□□□□□ -2.61
LINC00643Q86TS7 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 RNU6-674P-201ENST00000363831 107 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 SNORD14.1-201ENST00000365609 90 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 MIR891A-201ENST00000401237 79 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 RNU6-567P-201ENST00000516746 107 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 AC025647.1-201ENST00000517879 253 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 CR383656.4-201ENST00000546909 122 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 NAMPTP3-201ENST00000569273 224 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 MIR548AC-201ENST00000585049 88 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 AC010525.2-201ENST00000590920 195 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 AC008608.1-201ENST00000603910 127 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 AC068792.1-201ENST00000621354 417 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 FRG1KP-201ENST00000623592 341 ntBASIC-1.28□□□□□ -2.61
LINC00643Q86TS7 RNU6-552P-201ENST00000362869 119 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 Y_RNA.185-201ENST00000363894 100 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 RNU6-1126P-201ENST00000384002 107 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms