Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
USP53Q70EK8 RNU6-545P-201ENST00000362681 104 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 Y_RNA.361-201ENST00000365515 120 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 RNU6-805P-201ENST00000365643 106 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AP002088.1-201ENST00000382740 395 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 SNORD21-201ENST00000383953 95 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 MIR95-201ENST00000385072 81 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AL031003.1-201ENST00000404229 172 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 MIR1185-2-201ENST00000408687 86 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 RN7SKP284-201ENST00000411002 343 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 Y_RNA.793-201ENST00000411222 111 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AC024067.1-201ENST00000426199 223 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.13□□□□□ -1.91
USP53Q70EK8 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AL133393.1-201ENST00000603277 287 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AC005828.6-201ENST00000606610 232 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 AC093732.2-201ENST00000607950 274 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.13□□□□□ -1.91
USP53Q70EK8 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
USP53Q70EK8 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
USP53Q70EK8 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.12□□□□□ -1.91
USP53Q70EK8 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.12□□□□□ -1.91
USP53Q70EK8 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.12□□□□□ -1.91
USP53Q70EK8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP53Q70EK8 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.12□□□□□ -1.91
USP53Q70EK8 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 RN7SL442P-201ENST00000473804 320 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP53Q70EK8 ATP5EP1-201ENST00000510257 156 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 AC024405.2-202ENST00000532731 184 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
USP53Q70EK8 AC006023.1-201ENST00000603944 259 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
USP53Q70EK8 MIR5739-201ENST00000619803 80 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 U6.115-201ENST00000636045 103 ntBASIC3.12□□□□□ -1.91
USP53Q70EK8 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.12□□□□□ -1.91
USP53Q70EK8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
USP53Q70EK8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
USP53Q70EK8 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP53Q70EK8 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
USP53Q70EK8 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP53Q70EK8 RNU6-1272P-201ENST00000362776 107 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
USP53Q70EK8 FO393413.1-201ENST00000402892 195 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 AL139095.1-201ENST00000404326 391 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 AL139281.1-201ENST00000422120 335 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 RNU7-120P-201ENST00000459334 63 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 AC006483.1-201ENST00000487308 313 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 AC023141.11-201ENST00000508864 202 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.11□□□□□ -1.91
USP53Q70EK8 snoU18.1-201ENST00000629629 71 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP53Q70EK8 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.11□□□□□ -1.91
USP53Q70EK8 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.1□□□□□ -1.91
USP53Q70EK8 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.1□□□□□ -1.91
USP53Q70EK8 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP53Q70EK8 SNORD31B-201ENST00000364977 69 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
USP53Q70EK8 AC009969.1-201ENST00000438726 172 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 AL161788.1-201ENST00000441805 169 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.1□□□□□ -1.91
USP53Q70EK8 AC114982.1-201ENST00000469402 321 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.1□□□□□ -1.91
USP53Q70EK8 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.1□□□□□ -1.91
USP53Q70EK8 MIR3684-201ENST00000579779 74 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 UBL5P2-201ENST00000583788 219 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 MIR4753-201ENST00000585119 83 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 RPL12P50-201ENST00000603116 116 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 AC073476.4-201ENST00000628409 72 ntBASIC3.1□□□□□ -1.91
USP53Q70EK8 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP53Q70EK8 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.09□□□□□ -1.91
USP53Q70EK8 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP53Q70EK8 Y_RNA.180-201ENST00000363867 113 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 DYNLT3P1-201ENST00000378574 347 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 RNU6-1062P-201ENST00000383908 107 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 RNU6-211P-201ENST00000384047 107 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 SNORA44-201ENST00000384584 132 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 AC074290.1-201ENST00000448883 135 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 SUMO1P2-201ENST00000452524 304 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 HMGN1P18-201ENST00000457642 277 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 CYP2C59P-201ENST00000457790 269 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 AC016925.1-201ENST00000458303 298 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 RNU7-57P-201ENST00000459540 60 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 AP005660.1-201ENST00000522972 293 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 AP002392.1-201ENST00000537692 208 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.09□□□□□ -1.91
USP53Q70EK8 AC009127.3-201ENST00000570531 403 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 MIR2682-201ENST00000580305 110 ntBASIC3.09□□□□□ -1.91
USP53Q70EK8 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.09□□□□□ -1.91
USP53Q70EK8 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
USP53Q70EK8 Y_RNA.270-201ENST00000364693 104 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 Y_RNA.304-201ENST00000365011 112 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 RNU6-975P-201ENST00000384296 105 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 AL603908.1-201ENST00000406098 201 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 RNU6-710P-201ENST00000410424 105 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 CST9LP2-201ENST00000437612 320 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 AC107083.1-201ENST00000439643 279 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 RPL23AP58-201ENST00000440453 469 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms