Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 AC021269.2-201ENST00000532318 330 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 MIR4446-201ENST00000578505 67 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 MIR4658-201ENST00000584344 65 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 AL137847.3-201ENST00000611521 109 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
VPS53Q5VIR6 RNA5SP361-201ENST00000362686 118 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 RNU1-51P-201ENST00000365345 176 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 RNU6-1145P-201ENST00000384246 107 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 RNU6-1001P-201ENST00000411265 100 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AC018634.1-201ENST00000437554 401 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS53Q5VIR6 SNORA31.15-201ENST00000516771 132 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 RNU6-1271P-201ENST00000517049 105 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AC023157.2-201ENST00000540596 141 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AC136932.1-201ENST00000574771 208 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AL049779.4-201ENST00000604500 156 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 PCGEM1.1-201ENST00000613431 131 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 MIR376A1-201ENST00000616574 68 ntBASIC2.83□□□□□ -1.96
VPS53Q5VIR6 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS53Q5VIR6 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.83□□□□□ -1.96
VPS53Q5VIR6 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS53Q5VIR6 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS53Q5VIR6 RNU4-15P-201ENST00000362613 141 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 RNU6-873P-201ENST00000363833 107 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS53Q5VIR6 RNU1-138P-201ENST00000384093 164 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 RNU6-1093P-201ENST00000391194 107 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 RNA5SP508-201ENST00000411327 119 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS53Q5VIR6 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS53Q5VIR6 AC007395.1-201ENST00000451333 677 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS53Q5VIR6 CYCSP23-201ENST00000519781 313 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 MIR4300-201ENST00000581016 96 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 MIR4435-1-201ENST00000582552 80 ntBASIC2.82□□□□□ -1.96
VPS53Q5VIR6 ZNF204P-201ENST00000416749 2397 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 SNORD63-201ENST00000384262 68 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.462-201ENST00000384268 102 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.476-201ENST00000384347 108 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.483-201ENST00000384380 101 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 MIR320B2-201ENST00000408479 138 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 RPL21P38-201ENST00000418090 167 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS53Q5VIR6 SNORD127-201ENST00000458892 86 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 TRBVB-201ENST00000477100 408 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS53Q5VIR6 EIF4A1P12-201ENST00000551910 141 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 AC026470.2-201ENST00000561492 181 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 MIR4513-201ENST00000581077 86 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 AC010999.1-201ENST00000611856 324 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 AC011476.5-201ENST00000615594 130 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 U4atac.1-201ENST00000618345 95 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.81□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.143-201ENST00000363520 106 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.307-201ENST00000365022 117 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 RNU6-378P-201ENST00000384324 107 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS53Q5VIR6 AC096920.1-201ENST00000423991 241 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 RPS15AP28-201ENST00000435088 386 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 RNU6-1132P-201ENST00000459214 107 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 RPL26P26-201ENST00000480251 434 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 AC008413.1-201ENST00000511864 177 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 SNORA25.14-201ENST00000516481 132 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 SNRPGP20-201ENST00000604477 205 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.8□□□□□ -1.96
VPS53Q5VIR6 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS53Q5VIR6 RNU1-62P-201ENST00000362599 164 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 SNORD81.1-201ENST00000363064 77 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 U3.9-201ENST00000363823 204 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 RNU6-926P-201ENST00000384075 107 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.562-201ENST00000384695 113 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.595-201ENST00000410403 105 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 RNU6-1203P-201ENST00000410703 110 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AC139712.2-201ENST00000424302 339 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AL445305.1-201ENST00000432577 575 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AC108059.2-201ENST00000434626 151 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AL161788.1-201ENST00000441805 169 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AC090515.1-201ENST00000465295 476 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 RPS23P5-201ENST00000495419 428 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.683-201ENST00000516508 93 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 RNU6-794P-201ENST00000517261 64 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 RPL30P11-203ENST00000598995 310 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AL355297.2-201ENST00000604792 129 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 AC010615.1-201ENST00000594254 1764 ntBASIC2.79□□□□□ -1.96
VPS53Q5VIR6 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 RNU1-72P-201ENST00000362976 153 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.84-201ENST00000363011 104 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.179-201ENST00000363844 90 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.350-201ENST00000365409 98 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 RNU6-793P-201ENST00000384233 104 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 Y_RNA.489-201ENST00000384410 101 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms