Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.04□□□□□ -2.4
FOXA3P55318 AC067940.1-201ENST00000458411 300 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNU6-221P-201ENST00000459541 99 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC010469.2-201ENST00000496412 480 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC091951.3-201ENST00000504093 246 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNU2-69P-201ENST00000516061 100 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNU7-99P-201ENST00000516271 62 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 Y_RNA.672-201ENST00000516289 104 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNA5SP454-201ENST00000517231 127 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MTND4LP26-201ENST00000518144 282 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MIR4431-201ENST00000579990 94 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RAC1P9-201ENST00000604990 392 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AL133173.2-201ENST00000614270 90 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC022709.1-201ENST00000615967 87 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 U6.73-201ENST00000619194 103 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC009878.1-201ENST00000621819 340 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC138649.3-201ENST00000622154 254 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC008133.2-201ENST00000624540 351 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MIR924-201ENST00000638017 53 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MTND5P17-201ENST00000418405 1603 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.04□□□□□ -2.4
FOXA3P55318 AC005592.1-201ENST00000566527 1640 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 RNU6-266P-201ENST00000364225 107 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 Y_RNA.367-201ENST00000365544 101 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.03□□□□□ -2.4
FOXA3P55318 RNU6-793P-201ENST00000384233 104 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 SNORD105-201ENST00000386910 85 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 RNU6-994P-201ENST00000410507 111 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.03□□□□□ -2.4
FOXA3P55318 MTCYBP10-201ENST00000424905 650 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AL365184.2-201ENST00000431139 435 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.03□□□□□ -2.4
FOXA3P55318 MTND2P31-201ENST00000512602 616 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AC010493.1-201ENST00000513479 292 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.03□□□□□ -2.4
FOXA3P55318 FRG2DP-202ENST00000566967 323 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 MIR4300-201ENST00000581016 96 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 SNRPGP20-201ENST00000604477 205 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 RNU6-85P-201ENST00000605989 107 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AL157392.4-201ENST00000609756 345 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AL136317.1-201ENST00000612653 226 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 MIR6734-201ENST00000621166 68 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 AC004808.1-201ENST00000627671 721 ntBASIC0.03□□□□□ -2.4
FOXA3P55318 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
FOXA3P55318 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
FOXA3P55318 RNU5B-2P-201ENST00000363036 113 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU6-501P-201ENST00000364072 100 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU4-45P-201ENST00000365469 141 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU6-1029P-201ENST00000384109 107 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU6-434P-201ENST00000384376 107 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU6-1297P-201ENST00000384415 104 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 MIR526A1-201ENST00000384897 85 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 MIR487A-201ENST00000385009 80 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 MIR1185-1-201ENST00000408598 86 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AL596276.1-201ENST00000434465 418 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.02□□□□□ -2.41
FOXA3P55318 MTCO2P7-201ENST00000446518 666 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 EPS15P1-201ENST00000448836 336 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RPS29P15-201ENST00000458329 171 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU7-94P-201ENST00000459576 63 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AP000870.1-201ENST00000472927 406 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.02□□□□□ -2.41
FOXA3P55318 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.02□□□□□ -2.41
FOXA3P55318 RNU6-58P-201ENST00000517143 103 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RNU6-1116P-201ENST00000517269 99 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AC090572.1-201ENST00000519251 160 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 MRPS36P4-201ENST00000534436 298 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 PCMTD1P2-201ENST00000565017 355 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AGGF1P4-201ENST00000568249 801 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 MIR4775-201ENST00000581168 75 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AC004223.2-201ENST00000590309 544 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 AC138749.5-201ENST00000611461 208 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RMST_3.1-201ENST00000611651 109 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 RMST_2.1-201ENST00000617263 136 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 uc_338.34-201ENST00000617467 174 ntBASIC0.02□□□□□ -2.41
FOXA3P55318 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
FOXA3P55318 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.01□□□□□ -2.41
FOXA3P55318 ZNF204P-201ENST00000416749 2397 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 SNORD44.1-201ENST00000363202 61 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNU6-1097P-201ENST00000363586 107 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNY1P14-201ENST00000384426 108 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNA5SP219-201ENST00000390940 113 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNU6-177P-201ENST00000411257 104 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 MTND3P9-201ENST00000429526 346 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.01□□□□□ -2.41
FOXA3P55318 AC004854.1-201ENST00000440356 349 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.01□□□□□ -2.41
FOXA3P55318 SNRPGP12-201ENST00000449481 213 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNU6-612P-201ENST00000516909 102 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNU6-1096P-201ENST00000517089 102 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 AF235103.2-201ENST00000525753 346 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 AC036111.3-201ENST00000526389 112 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 SNORA4-201ENST00000584302 138 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 AC018714.1-201ENST00000605028 208 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 AL162730.1-201ENST00000605734 292 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 RNU4-5P-201ENST00000607255 135 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 AC100812.1-201ENST00000607622 580 ntBASIC0.01□□□□□ -2.41
FOXA3P55318 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.01□□□□□ -2.41
FOXA3P55318 AC099654.13-201ENST00000639774 207 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms