Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EIF4E2P1-201ENST00000393781 255 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 MIR450B-201ENST00000401182 78 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 MRPL35P1-201ENST00000404272 572 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 RNU6-648P-201ENST00000410190 107 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA1P55317 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA1P55317 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA1P55317 RPS27P1-201ENST00000450552 247 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA1P55317 AC007215.1-201ENST00000464893 276 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 RPS29P1-201ENST00000465274 159 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 AC114982.1-201ENST00000469402 321 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 AC026407.1-201ENST00000518369 204 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 CBX3P8-201ENST00000532412 525 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
FOXA1P55317 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA1P55317 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.86□□□□□ -2.27
FOXA1P55317 AC015688.6-201ENST00000577737 104 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 FAM106DP-201ENST00000586416 501 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA1P55317 AL078604.3-201ENST00000615580 211 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA1P55317 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.86□□□□□ -2.27
FOXA1P55317 RNU6-1305P-201ENST00000364353 104 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 RNU6-784P-201ENST00000384330 106 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 Y_RNA.481-201ENST00000384373 102 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 RNU6-1065P-201ENST00000384513 106 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 MIR194-1-201ENST00000384892 85 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 MIR222-201ENST00000384992 110 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 MIR586-201ENST00000385035 97 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.85□□□□□ -2.27
FOXA1P55317 COX6CP10-201ENST00000416832 224 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 USP9YP14-201ENST00000430663 563 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 MTATP6P17-201ENST00000431030 672 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 HMGN2P34-201ENST00000437647 269 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 RPS26P45-201ENST00000471748 340 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC083904.1-201ENST00000487828 231 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 MTCO1P29-201ENST00000496868 288 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.85□□□□□ -2.27
FOXA1P55317 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.85□□□□□ -2.27
FOXA1P55317 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.85□□□□□ -2.27
FOXA1P55317 MTND1P35-201ENST00000526739 508 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AL137100.2-201ENST00000555786 315 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.85□□□□□ -2.27
FOXA1P55317 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.85□□□□□ -2.27
FOXA1P55317 AC005668.1-201ENST00000571142 476 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC100830.2-201ENST00000581636 240 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC146944.4-201ENST00000602697 718 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 SNRPGP20-201ENST00000604477 205 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AL158209.2-201ENST00000619266 216 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC073534.2-201ENST00000620377 381 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC006001.4-201ENST00000622243 395 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 AC097520.1-201ENST00000624435 385 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 SCARNA4-201ENST00000629045 128 ntBASIC0.85□□□□□ -2.27
FOXA1P55317 MTND4P5-201ENST00000435821 1374 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-1085P-201ENST00000363576 107 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-522P-201ENST00000364497 107 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 SNORD116-9-201ENST00000384000 95 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-1042P-201ENST00000384204 107 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 SNORD116-3-201ENST00000384287 95 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 SNORD116-7-201ENST00000384404 95 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-933P-201ENST00000384424 107 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 SNORD116-5-201ENST00000384462 95 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-417P-201ENST00000384712 107 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 CALM2P3-201ENST00000400429 449 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-57P-201ENST00000411348 103 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.84□□□□□ -2.27
FOXA1P55317 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC0.84□□□□□ -2.27
FOXA1P55317 RPL23AP75-201ENST00000491601 451 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AL163195.1-201ENST00000496941 348 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.84□□□□□ -2.27
FOXA1P55317 Y_RNA.688-201ENST00000516565 95 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 RNU6-405P-201ENST00000516637 110 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AC016957.1-201ENST00000534895 309 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.84□□□□□ -2.27
FOXA1P55317 AC022709.1-201ENST00000615967 87 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AC022079.1-201ENST00000621546 602 ntBASIC0.84□□□□□ -2.27
FOXA1P55317 AC121333.1-201ENST00000567488 2709 ntBASIC0.84□□□□□ -2.28
FOXA1P55317 ZNF204P-201ENST00000416749 2397 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 Y_RNA.231-201ENST00000364358 102 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 Y_RNA.287-201ENST00000364853 94 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU6-534P-201ENST00000364877 106 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 SNORA72.2-201ENST00000365028 127 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU6-259P-201ENST00000383999 107 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 SNORA67.2-201ENST00000384300 149 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 MTCO3P40-201ENST00000392516 676 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU2-66P-201ENST00000410650 161 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU6-1068P-201ENST00000410958 103 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 MTCO1P20-201ENST00000425366 358 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.83□□□□□ -2.28
FOXA1P55317 AC074290.1-201ENST00000448883 135 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU7-57P-201ENST00000459540 60 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU6-1146P-201ENST00000516282 102 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU7-40P-201ENST00000516397 64 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.83□□□□□ -2.28
FOXA1P55317 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.83□□□□□ -2.28
FOXA1P55317 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.83□□□□□ -2.28
FOXA1P55317 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.83□□□□□ -2.28
FOXA1P55317 AC026371.1-201ENST00000551867 419 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 MIR4709-201ENST00000577272 72 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms