Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.94□□□□□ -2.26
COL5A3P25940 AC109635.3-201ENST00000529536 185 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.94□□□□□ -2.26
COL5A3P25940 MIR3923-201ENST00000579521 83 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.94□□□□□ -2.26
COL5A3P25940 FGF7P1-201ENST00000582820 288 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 AP003465.2-201ENST00000602571 373 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 AC018889.1-201ENST00000605372 397 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 RNU1-58P-201ENST00000362413 163 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 SNORD32A-201ENST00000364805 84 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 Y_RNA.301-201ENST00000364990 103 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 RNU4-20P-201ENST00000365601 151 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 Y_RNA.615-201ENST00000410769 117 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 EIF1P1-201ENST00000421436 341 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 UBE2V1P4-201ENST00000425374 344 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.93□□□□□ -2.26
COL5A3P25940 MTND3P9-201ENST00000429526 346 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AL133396.1-201ENST00000432048 687 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.93□□□□□ -2.26
COL5A3P25940 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.93□□□□□ -2.26
COL5A3P25940 PCMTD1P1-201ENST00000455560 355 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 MTND1P11-201ENST00000456661 876 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 TRBVA-201ENST00000498804 316 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC021146.2-201ENST00000504736 556 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC025465.4-201ENST00000513422 638 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AF235103.2-201ENST00000525753 346 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AP000763.2-201ENST00000540641 163 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC025423.5-201ENST00000550230 219 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC133485.1-201ENST00000567176 124 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC138907.6-201ENST00000568401 126 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 CPDP1-201ENST00000579660 283 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 MIR3136-201ENST00000583498 78 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AL133215.3-201ENST00000609801 448 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC063943.3-201ENST00000615562 356 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 AC090617.10-201ENST00000624308 134 ntBASIC0.93□□□□□ -2.26
COL5A3P25940 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
COL5A3P25940 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
COL5A3P25940 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.93□□□□□ -2.26
COL5A3P25940 Y_RNA.2-201ENST00000362330 96 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU4-15P-201ENST00000362613 141 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-451P-201ENST00000362921 107 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-1252P-201ENST00000363054 104 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 Y_RNA.132-201ENST00000363421 102 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-522P-201ENST00000364497 107 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 SNORA25B-201ENST00000365507 128 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-26P-201ENST00000383985 107 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-933P-201ENST00000384424 107 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNA5SP201-201ENST00000410316 124 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RPL30P13-201ENST00000418873 348 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RPL23AP95-201ENST00000426806 265 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AL359672.1-201ENST00000442302 409 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.92□□□□□ -2.26
COL5A3P25940 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 RPL23AP75-201ENST00000491601 451 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.92□□□□□ -2.26
COL5A3P25940 AC069439.1-201ENST00000494739 167 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.92□□□□□ -2.26
COL5A3P25940 AC082651.2-201ENST00000496833 166 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 AC022447.4-201ENST00000504053 364 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC115990.1-201ENST00000526957 301 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 SCOCP1-201ENST00000554676 349 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC021231.3-201ENST00000558497 370 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 BNIP3P25-201ENST00000596023 559 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AP001836.1-201ENST00000604675 523 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 MIR8076-201ENST00000611401 83 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RMST_3.1-201ENST00000611651 109 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.92□□□□□ -2.26
COL5A3P25940 AL132822.1-201ENST00000617063 513 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC006504.8-201ENST00000621046 635 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 MIR338-201ENST00000636369 67 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 SNORD98-201ENST00000636377 67 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 CBX3P1-201ENST00000325243 554 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-655P-201ENST00000362858 107 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 Y_RNA.100-201ENST00000363141 102 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 Y_RNA.157-201ENST00000363638 102 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNA5SP499-201ENST00000363982 119 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 SNORD114-6-201ENST00000364393 72 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-790P-201ENST00000384479 105 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 MIR518A2-201ENST00000384966 87 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 MIR186-201ENST00000384988 86 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 MIR1283-2-201ENST00000408621 87 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.92□□□□□ -2.26
COL5A3P25940 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.92□□□□□ -2.26
COL5A3P25940 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 PRELID3BP1-201ENST00000457142 540 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU7-66P-201ENST00000459469 62 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.92□□□□□ -2.26
COL5A3P25940 RPS23P5-201ENST00000495419 428 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC016632.1-201ENST00000503994 196 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC093259.1-201ENST00000509755 300 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 Y_RNA.665-201ENST00000516177 98 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 RNU6-256P-201ENST00000516747 97 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC090517.1-201ENST00000569307 266 ntBASIC0.92□□□□□ -2.26
COL5A3P25940 AC005786.1-201ENST00000588553 154 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms