Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.47□□□□□ -2.17
SDC1P18827 RN7SKP210-201ENST00000459176 261 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AP000870.1-201ENST00000472927 406 ntBASIC1.47□□□□□ -2.17
SDC1P18827 Y_RNA.670-201ENST00000516255 105 ntBASIC1.47□□□□□ -2.17
SDC1P18827 RNU7-30P-201ENST00000516835 62 ntBASIC1.47□□□□□ -2.17
SDC1P18827 RNU6-1198P-201ENST00000516904 67 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.47□□□□□ -2.17
SDC1P18827 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.47□□□□□ -2.17
SDC1P18827 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.47□□□□□ -2.17
SDC1P18827 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.47□□□□□ -2.17
SDC1P18827 SNORD11B-201ENST00000607707 90 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AL353149.1-201ENST00000610667 244 ntBASIC1.47□□□□□ -2.17
SDC1P18827 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AC126177.8-201ENST00000618339 1015 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AL078596.1-201ENST00000624856 447 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AC068205.3-201ENST00000636385 468 ntBASIC1.47□□□□□ -2.17
SDC1P18827 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.47□□□□□ -2.17
SDC1P18827 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.46□□□□□ -2.18
SDC1P18827 Y_RNA.160-201ENST00000363677 92 ntBASIC1.46□□□□□ -2.18
SDC1P18827 RNU6-137P-201ENST00000363680 108 ntBASIC1.46□□□□□ -2.18
SDC1P18827 Y_RNA.279-201ENST00000364763 95 ntBASIC1.46□□□□□ -2.18
SDC1P18827 RNU6-767P-201ENST00000384132 107 ntBASIC1.46□□□□□ -2.18
SDC1P18827 Y_RNA.490-201ENST00000384413 102 ntBASIC1.46□□□□□ -2.18
SDC1P18827 RNU6-541P-201ENST00000384709 110 ntBASIC1.46□□□□□ -2.18
SDC1P18827 MIR1323-201ENST00000408090 73 ntBASIC1.46□□□□□ -2.18
SDC1P18827 SNORA11.2-201ENST00000408318 127 ntBASIC1.46□□□□□ -2.18
SDC1P18827 RNU6-57P-201ENST00000411348 103 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC074085.1-201ENST00000413598 418 ntBASIC1.46□□□□□ -2.18
SDC1P18827 MTND3P23-201ENST00000431980 347 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC107399.1-201ENST00000451226 265 ntBASIC1.46□□□□□ -2.18
SDC1P18827 RNU7-57P-201ENST00000459540 60 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC091179.3-201ENST00000474761 144 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC046134.1-201ENST00000514454 666 ntBASIC1.46□□□□□ -2.18
SDC1P18827 RNU7-175P-201ENST00000515915 61 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC134698.4-201ENST00000523451 826 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AP003033.1-201ENST00000527244 415 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.46□□□□□ -2.18
SDC1P18827 AK6P2-201ENST00000549020 471 ntBASIC1.46□□□□□ -2.18
SDC1P18827 HSBP1P1-201ENST00000555205 166 ntBASIC1.46□□□□□ -2.18
SDC1P18827 MIR3683-201ENST00000580847 82 ntBASIC1.46□□□□□ -2.18
SDC1P18827 MIR3945-201ENST00000581853 98 ntBASIC1.46□□□□□ -2.18
SDC1P18827 7SK.7-201ENST00000603504 247 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC069114.2-201ENST00000604699 304 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AL355802.3-201ENST00000607571 545 ntBASIC1.46□□□□□ -2.18
SDC1P18827 AC005014.2-201ENST00000607795 599 ntBASIC1.46□□□□□ -2.18
SDC1P18827 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.46□□□□□ -2.18
SDC1P18827 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.46□□□□□ -2.18
SDC1P18827 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.46□□□□□ -2.18
SDC1P18827 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.45□□□□□ -2.18
SDC1P18827 RNU1-62P-201ENST00000362599 164 ntBASIC1.45□□□□□ -2.18
SDC1P18827 Y_RNA.88-201ENST00000363029 99 ntBASIC1.45□□□□□ -2.18
SDC1P18827 RNU1-96P-201ENST00000364163 162 ntBASIC1.45□□□□□ -2.18
SDC1P18827 RNU6-593P-201ENST00000364716 112 ntBASIC1.45□□□□□ -2.18
SDC1P18827 SNORD87-201ENST00000364849 89 ntBASIC1.45□□□□□ -2.18
SDC1P18827 RNU6-601P-201ENST00000384540 107 ntBASIC1.45□□□□□ -2.18
SDC1P18827 MIR10B-201ENST00000385011 110 ntBASIC1.45□□□□□ -2.18
SDC1P18827 MT-TL1-201ENST00000386347 75 ntBASIC1.45□□□□□ -2.18
SDC1P18827 RNU6-876P-201ENST00000391295 104 ntBASIC1.45□□□□□ -2.18
SDC1P18827 SNORA26.9-201ENST00000391322 122 ntBASIC1.45□□□□□ -2.18
SDC1P18827 MIR1261-201ENST00000408659 82 ntBASIC1.45□□□□□ -2.18
SDC1P18827 RNU6-1050P-201ENST00000410388 107 ntBASIC1.45□□□□□ -2.18
SDC1P18827 AC016909.1-201ENST00000415916 166 ntBASIC1.45□□□□□ -2.18
SDC1P18827 CYCSP49-201ENST00000420810 319 ntBASIC1.45□□□□□ -2.18
SDC1P18827 AC007677.1-201ENST00000445757 515 ntBASIC1.45□□□□□ -2.18
SDC1P18827 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.45□□□□□ -2.18
SDC1P18827 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.45□□□□□ -2.18
SDC1P18827 AC009229.3-201ENST00000608056 282 ntBASIC1.45□□□□□ -2.18
SDC1P18827 AC006001.4-201ENST00000622243 395 ntBASIC1.45□□□□□ -2.18
SDC1P18827 MIR338-201ENST00000636369 67 ntBASIC1.45□□□□□ -2.18
SDC1P18827 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
SDC1P18827 RNU6-222P-201ENST00000362438 107 ntBASIC1.44□□□□□ -2.18
SDC1P18827 RNU6-727P-201ENST00000363592 107 ntBASIC1.44□□□□□ -2.18
SDC1P18827 SNORA33-201ENST00000363664 130 ntBASIC1.44□□□□□ -2.18
SDC1P18827 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SDC1P18827 Y_RNA.415-201ENST00000384012 112 ntBASIC1.44□□□□□ -2.18
SDC1P18827 MIR1304-201ENST00000408243 91 ntBASIC1.44□□□□□ -2.18
SDC1P18827 RPL37P10-201ENST00000412884 288 ntBASIC1.44□□□□□ -2.18
SDC1P18827 PDCL2P1-201ENST00000419302 352 ntBASIC1.44□□□□□ -2.18
SDC1P18827 HMGN2P34-201ENST00000437647 269 ntBASIC1.44□□□□□ -2.18
SDC1P18827 AC074290.1-201ENST00000448883 135 ntBASIC1.44□□□□□ -2.18
SDC1P18827 HMGN2P23-201ENST00000456759 269 ntBASIC1.44□□□□□ -2.18
SDC1P18827 RPL7P42-201ENST00000481005 679 ntBASIC1.44□□□□□ -2.18
SDC1P18827 AC027575.1-201ENST00000481064 460 ntBASIC1.44□□□□□ -2.18
SDC1P18827 RNA5SP437-201ENST00000517249 129 ntBASIC1.44□□□□□ -2.18
SDC1P18827 MIR5701-3-201ENST00000578890 82 ntBASIC1.44□□□□□ -2.18
SDC1P18827 MIR5701-1-201ENST00000585138 82 ntBASIC1.44□□□□□ -2.18
SDC1P18827 AC116312.1-201ENST00000606841 314 ntBASIC1.44□□□□□ -2.18
SDC1P18827 MIR5701-2-201ENST00000615634 82 ntBASIC1.44□□□□□ -2.18
SDC1P18827 snoZ196.1-201ENST00000625269 89 ntBASIC1.44□□□□□ -2.18
SDC1P18827 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.44□□□□□ -2.18
SDC1P18827 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SDC1P18827 Y_RNA.2-201ENST00000362330 96 ntBASIC1.43□□□□□ -2.18
SDC1P18827 RNU6-845P-201ENST00000362578 103 ntBASIC1.43□□□□□ -2.18
SDC1P18827 snoU2-30.2-201ENST00000362805 70 ntBASIC1.43□□□□□ -2.18
SDC1P18827 MIR548B-201ENST00000385247 97 ntBASIC1.43□□□□□ -2.18
SDC1P18827 FGF7P8-201ENST00000402994 292 ntBASIC1.43□□□□□ -2.18
SDC1P18827 MIR1289-2-201ENST00000408360 111 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.43□□□□□ -2.18
SDC1P18827 CST2P1-201ENST00000425770 87 ntBASIC1.43□□□□□ -2.18
SDC1P18827 USMG5P1-201ENST00000425964 177 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms