Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.55□□□□□ -2.16
FOXA2Q9Y261 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA2Q9Y261 ZNF299P-201ENST00000406845 1804 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU1-62P-201ENST00000362599 164 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 Y_RNA.86-201ENST00000363020 111 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU6-596P-201ENST00000365395 98 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU6-17P-201ENST00000384245 107 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 SNORA67.2-201ENST00000384300 149 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU6-18P-201ENST00000384527 107 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU6-417P-201ENST00000384712 107 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 MIR515-2-201ENST00000384883 83 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 MIR515-1-201ENST00000384884 83 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNA5SP323-201ENST00000391094 133 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU6-510P-201ENST00000391239 108 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 FCF1P9-201ENST00000412546 282 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 USP9YP30-201ENST00000430729 455 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 MTND1P17-201ENST00000448961 204 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 PPP1R2P5-201ENST00000457256 603 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 AC011352.1-201ENST00000512300 793 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU1-41P-201ENST00000516161 162 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU1-48P-201ENST00000516400 162 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 MIR3945-201ENST00000581853 98 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 AC068790.6-201ENST00000602558 258 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.15-201ENST00000611544 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.16-201ENST00000613119 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.12-201ENST00000613778 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.20-201ENST00000613956 192 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.9-201ENST00000615427 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.11-201ENST00000616345 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.2-201ENST00000616535 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.3-201ENST00000617785 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.19-201ENST00000618602 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU2-1-201ENST00000618664 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.6-201ENST00000619225 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.5-201ENST00000619465 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 AC009248.2-201ENST00000619826 254 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 U2.10-201ENST00000620268 191 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
FOXA2Q9Y261 AC100821.1-201ENST00000523153 2479 ntBASIC1.54□□□□□ -2.16
FOXA2Q9Y261 RNU6-727P-201ENST00000363592 107 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 RNU6-1059P-201ENST00000363752 98 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 SNORA63D-201ENST00000364359 132 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 RNU6-338P-201ENST00000383888 105 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AL356776.1-201ENST00000406574 447 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 SNORA11.2-201ENST00000408318 127 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 RNU6-174P-201ENST00000410406 106 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 EIF1P1-201ENST00000421436 341 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 USMG5P1-201ENST00000425964 177 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA2Q9Y261 HSPE1P24-201ENST00000450782 238 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 MTND4P12-201ENST00000498999 1377 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AC116337.1-201ENST00000509680 687 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.53□□□□□ -2.16
FOXA2Q9Y261 Y_RNA.682-201ENST00000516457 100 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 UBL5P4-201ENST00000562584 236 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AL158827.2-201ENST00000602494 330 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 SNRPGP19-201ENST00000603826 189 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AC012493.3-201ENST00000604494 112 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AC007014.2-201ENST00000615581 479 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AC002553.4-201ENST00000616896 331 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA2Q9Y261 AL691447.3-201ENST00000635020 330 ntBASIC1.53□□□□□ -2.16
FOXA2Q9Y261 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA2Q9Y261 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA2Q9Y261 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.52□□□□□ -2.17
FOXA2Q9Y261 SNORD114-1-201ENST00000362705 72 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.67-201ENST00000362870 100 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 RNU4-42P-201ENST00000364738 142 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.301-201ENST00000364990 103 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.490-201ENST00000384413 102 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 RNU6-159P-201ENST00000391080 106 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 RNU2-2P-201ENST00000410396 191 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 RNU2-20P-201ENST00000410425 191 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 JTBP1-201ENST00000441314 247 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 AC073910.1-201ENST00000445047 438 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 RNU6-221P-201ENST00000459541 99 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 RPL26P26-201ENST00000480251 434 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.706-201ENST00000516933 99 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA2Q9Y261 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA2Q9Y261 BNIP3P10-201ENST00000605360 577 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 MIR8063-201ENST00000621930 81 ntBASIC1.52□□□□□ -2.17
FOXA2Q9Y261 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA2Q9Y261 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 RNU6-595P-201ENST00000363944 107 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 SNORD87-201ENST00000364849 89 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 RNU6-1240P-201ENST00000365155 104 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.405-201ENST00000383979 100 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.451-201ENST00000384200 100 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 RNU6-793P-201ENST00000384233 104 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.524-201ENST00000384564 100 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms