Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 USP9YP30-201ENST00000430729 455 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC099677.2-201ENST00000436385 175 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC003989.2-201ENST00000440224 169 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC074290.1-201ENST00000448883 135 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC116353.2-201ENST00000505332 712 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC008834.1-201ENST00000511612 175 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 RNU6-1016P-201ENST00000516689 94 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AL590705.4-201ENST00000532209 134 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 GNAI2P1-201ENST00000541815 315 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 MIR4790-201ENST00000577799 79 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 AC011494.1-201ENST00000596454 237 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 MTND4P12-201ENST00000498999 1377 ntBASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.33□□□□□ -2.2
RPUSD4Q96CM3 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AL356292.1-201ENST00000283110 373 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.111-201ENST00000363248 100 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.248-201ENST00000364501 109 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 RNU6-418P-201ENST00000384035 107 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.500-201ENST00000384466 111 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 MIR487A-201ENST00000385009 80 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC074085.1-201ENST00000413598 418 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 NCOR1P3-201ENST00000420479 303 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC060773.1-201ENST00000421698 310 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 CST2P1-201ENST00000425770 87 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC010409.1-201ENST00000487382 476 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC018710.1-201ENST00000506509 158 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 RNU7-175P-201ENST00000515915 61 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 RNA5SP182-201ENST00000516064 82 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.682-201ENST00000516457 100 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC134698.4-201ENST00000523451 826 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AP003033.1-201ENST00000527244 415 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AP000889.1-201ENST00000530968 660 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC110588.1-201ENST00000559699 137 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 MIR3198-2-201ENST00000577868 80 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 MIR4273-201ENST00000582824 84 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC011712.1-201ENST00000588959 234 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 7SK.7-201ENST00000603504 247 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 SNORD11B-201ENST00000607707 90 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 MIR6128-201ENST00000615528 109 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AL133216.2-202ENST00000634512 349 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 AC068205.3-201ENST00000636385 468 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
RPUSD4Q96CM3 RNU6-280P-201ENST00000364145 104 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 SNORA63D-201ENST00000364359 132 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 RNU6-1019P-201ENST00000364424 107 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.533-201ENST00000384596 114 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 RNA5SP213-201ENST00000391031 106 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 RNU1-139P-201ENST00000391307 165 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC245047.4-201ENST00000433189 144 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 RNU6-221P-201ENST00000459541 99 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 FO393415.2-201ENST00000480085 343 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC011406.1-201ENST00000512440 370 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.691-201ENST00000516611 103 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 RNU6-273P-201ENST00000516937 96 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC091544.4-201ENST00000555268 342 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC069114.2-201ENST00000604699 304 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC084782.3-201ENST00000612282 578 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC083806.3-201ENST00000614016 455 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.31□□□□□ -2.2
RPUSD4Q96CM3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 U3.8-201ENST00000363675 217 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 RNU6-767P-201ENST00000384132 107 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 Y_RNA.482-201ENST00000384377 111 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 MIR583-201ENST00000384846 75 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 MIR515-2-201ENST00000384883 83 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 MIR515-1-201ENST00000384884 83 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 MIR9-3-201ENST00000385084 90 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 USMG5P1-201ENST00000425964 177 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 MTND1P2-201ENST00000430604 821 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AC093303.1-201ENST00000514549 295 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 RNA5SP384-201ENST00000516615 116 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 SNORA31.17-201ENST00000516953 127 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 SNORA44.1-201ENST00000517031 108 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AC105029.1-201ENST00000520250 669 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AL121579.1-201ENST00000555129 305 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 uc_338.5-201ENST00000611839 155 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 AL078596.1-201ENST00000624856 447 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 MIR338-201ENST00000636369 67 ntBASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
RPUSD4Q96CM3 RNU6-845P-201ENST00000362578 103 ntBASIC1.29□□□□□ -2.2
RPUSD4Q96CM3 RNU6-1059P-201ENST00000363752 98 ntBASIC1.29□□□□□ -2.2
RPUSD4Q96CM3 RNU6-873P-201ENST00000363833 107 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms