Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC005908.1-201ENST00000468701 347 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AC021146.2-201ENST00000504736 556 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 FGF7P4-201ENST00000509595 295 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AC091874.1-201ENST00000511402 339 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.682-201ENST00000516457 100 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 SNORA25.15-201ENST00000516487 89 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AC069113.1-201ENST00000517763 267 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AC069114.2-201ENST00000604699 304 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 TPTEP1-208ENST00000636884 213 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AC112487.2-201ENST00000637950 304 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 MTND4P23-201ENST00000447723 1363 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-562P-201ENST00000362731 107 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.142-201ENST00000363491 102 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.263-201ENST00000364659 114 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.529-201ENST00000384586 119 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-360P-201ENST00000390944 104 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 SNORA26.3-201ENST00000391119 136 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RNA5SP201-201ENST00000410316 124 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RN7SKP51-201ENST00000410781 304 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-325P-201ENST00000411132 105 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 AL133396.1-201ENST00000432048 687 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RPL9P9-202ENST00000466501 579 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 RPL23AP63-201ENST00000498752 471 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 AC093027.1-201ENST00000546698 429 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 AC104581.2-201ENST00000572227 430 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 C8orf59P2-201ENST00000603441 271 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 AP001485.1-201ENST00000604799 199 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 SNORA43.4-201ENST00000629559 138 ntBASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.57□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.151-201ENST00000363566 112 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-1059P-201ENST00000363752 98 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-1317P-201ENST00000364582 104 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.473-201ENST00000384333 102 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-1026P-201ENST00000384465 108 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.509-201ENST00000384506 99 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-306P-201ENST00000384617 107 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AC139712.2-201ENST00000424302 339 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 JTBP1-201ENST00000441314 247 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 RNA5SP481-201ENST00000516814 122 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-902P-201ENST00000517212 91 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AC026371.1-201ENST00000551867 419 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 MIR3683-201ENST00000580847 82 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AP000942.3-201ENST00000603702 160 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AL133215.3-201ENST00000609801 448 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 uc_338.5-201ENST00000611839 155 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.804-201ENST00000615262 101 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AL359697.1-201ENST00000624879 587 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 AL450472.1-202ENST00000637286 180 ntBASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
ZNF540Q8NDQ6 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 RNU1-17P-201ENST00000363022 152 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 Y_RNA.140-201ENST00000363474 103 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 SNORD31B-201ENST00000364977 69 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-842P-201ENST00000384269 107 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 RPL23AP95-201ENST00000426806 265 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AL645568.3-201ENST00000433683 316 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AL603825.1-201ENST00000438481 80 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC026782.1-201ENST00000512952 449 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 RNU5F-4P-201ENST00000516581 114 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 SNORA31.16-201ENST00000516773 139 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 EIF4A1P12-201ENST00000551910 141 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC021231.3-201ENST00000558497 370 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 MIR4790-201ENST00000577799 79 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 PRR13P7-201ENST00000605538 430 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 MIR502-201ENST00000606349 86 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC093913.1-201ENST00000614178 329 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC022513.1-201ENST00000624512 117 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 AC099654.5-201ENST00000636479 350 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 MTND4P12-201ENST00000498999 1377 ntBASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
ZNF540Q8NDQ6 MTND5P10-201ENST00000603719 1809 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-214P-201ENST00000384130 107 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 SNORD116-29-201ENST00000384516 83 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-296P-201ENST00000384608 107 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-1009P-201ENST00000390996 107 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 SNORA67.5-201ENST00000391036 107 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms