Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AC008752.3-201ENST00000588113 712 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AL357312.1-201ENST00000603879 298 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AL157786.1-207ENST00000627771 695 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 RNU6-1123P-201ENST00000362347 106 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 SNORD32B-201ENST00000364460 84 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 snoZ40.1-201ENST00000364540 72 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 MTND1P22-201ENST00000510572 951 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC011979.2-201ENST00000527568 352 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 DEFB131C-201ENST00000528817 165 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 MIR5006-201ENST00000583027 110 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC004866.1-201ENST00000411748 78 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC016909.1-201ENST00000415916 166 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC010486.2-201ENST00000505572 483 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 SNORD111.1-201ENST00000516421 86 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AP002453.2-201ENST00000533503 320 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC099785.1-201ENST00000605697 437 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC078938.1-201ENST00000620993 318 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC134026.1-201ENST00000623249 2239 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 RNU6-369P-201ENST00000362515 102 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC027644.1-201ENST00000419595 298 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC010154.1-201ENST00000425857 269 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 ELOCP24-201ENST00000456370 334 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC113347.3-201ENST00000509113 148 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 RNU6-123P-201ENST00000516163 102 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 RNU1-142P-201ENST00000516682 145 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC024405.2-202ENST00000532731 184 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 SNORA59B-202ENST00000578183 701 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL117336.2-201ENST00000602435 335 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL390123.1-201ENST00000603216 237 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 MTATP6P2-201ENST00000603319 678 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AL121992.2-201ENST00000606262 256 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 AC022893.3-201ENST00000607665 437 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 U6.108-201ENST00000637764 58 ntBASIC-0.12□□□□□ -2.43
CHD9Q3L8U1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNY4P16-201ENST00000364768 94 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU2-8P-201ENST00000410727 190 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AL590135.1-201ENST00000422215 156 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC019205.3-201ENST00000424573 156 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 MTND1P20-201ENST00000430341 950 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC016700.2-201ENST00000446011 156 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC015911.1-201ENST00000495111 156 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNA5SP216-201ENST00000516111 123 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNA5SP461-201ENST00000516451 104 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.689-201ENST00000516589 107 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 MIR5708-201ENST00000579723 85 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC064872.1-201ENST00000604823 1072 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC120349.2-201ENST00000625002 298 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-534P-201ENST00000364877 106 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 SNORA75B-201ENST00000384053 137 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNY3P14-201ENST00000384309 102 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-1179P-201ENST00000384667 107 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC109327.2-201ENST00000448339 378 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-1102P-201ENST00000516149 96 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-1146P-201ENST00000516282 102 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC103996.1-201ENST00000555468 102 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 NAMPTP3-201ENST00000569273 224 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 MIR5697-201ENST00000578045 78 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 DPPA3P3-201ENST00000603842 430 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 AC112204.3-201ENST00000623822 332 ntBASIC-0.13□□□□□ -2.43
CHD9Q3L8U1 RNU6-545P-201ENST00000362681 104 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNY3P13-201ENST00000365542 102 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 MIR573-201ENST00000384964 99 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNU6-370P-201ENST00000411008 104 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 MTCYBP10-201ENST00000424905 650 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 MTCO1P19-201ENST00000443487 500 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNU7-14P-201ENST00000459331 62 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RPL39P38-201ENST00000467018 153 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 SCARNA17-201ENST00000516183 144 ntBASIC-0.14□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms