Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR4744-201ENST00000581563 82 ntBASIC3.28□□□□□ -1.88
RNF4P78317 MIR4753-201ENST00000585119 83 ntBASIC3.28□□□□□ -1.88
RNF4P78317 AL713866.2-201ENST00000603579 219 ntBASIC3.28□□□□□ -1.88
RNF4P78317 U4.6-201ENST00000621618 127 ntBASIC3.28□□□□□ -1.88
RNF4P78317 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RNF4P78317 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.28□□□□□ -1.89
RNF4P78317 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
RNF4P78317 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
RNF4P78317 RNU6-151P-201ENST00000364158 107 ntBASIC3.27□□□□□ -1.89
RNF4P78317 CD24P4-201ENST00000382840 243 ntBASIC3.27□□□□□ -1.89
RNF4P78317 Y_RNA.488-201ENST00000384403 102 ntBASIC3.27□□□□□ -1.89
RNF4P78317 RNU6-578P-201ENST00000390980 103 ntBASIC3.27□□□□□ -1.89
RNF4P78317 RNU6-131P-201ENST00000391144 107 ntBASIC3.27□□□□□ -1.89
RNF4P78317 AL355796.1-201ENST00000406706 323 ntBASIC3.27□□□□□ -1.89
RNF4P78317 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.27□□□□□ -1.89
RNF4P78317 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.27□□□□□ -1.89
RNF4P78317 CR769767.1-201ENST00000436337 346 ntBASIC3.27□□□□□ -1.89
RNF4P78317 HSPE1P21-201ENST00000438283 308 ntBASIC3.27□□□□□ -1.89
RNF4P78317 AC016717.1-201ENST00000448918 286 ntBASIC3.27□□□□□ -1.89
RNF4P78317 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.27□□□□□ -1.89
RNF4P78317 AC245047.8-201ENST00000456455 284 ntBASIC3.27□□□□□ -1.89
RNF4P78317 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.27□□□□□ -1.89
RNF4P78317 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.27□□□□□ -1.89
RNF4P78317 RNU2-27P-201ENST00000516185 142 ntBASIC3.27□□□□□ -1.89
RNF4P78317 AC027419.1-201ENST00000522976 328 ntBASIC3.27□□□□□ -1.89
RNF4P78317 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.27□□□□□ -1.89
RNF4P78317 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.27□□□□□ -1.89
RNF4P78317 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.27□□□□□ -1.89
RNF4P78317 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
RNF4P78317 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
RNF4P78317 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
RNF4P78317 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
RNF4P78317 FAM35CP-201ENST00000554755 2470 ntBASIC3.26□□□□□ -1.89
RNF4P78317 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
RNF4P78317 RNU6-234P-201ENST00000365229 104 ntBASIC3.26□□□□□ -1.89
RNF4P78317 Y_RNA.343-201ENST00000365354 112 ntBASIC3.26□□□□□ -1.89
RNF4P78317 Y_RNA.400-201ENST00000383963 111 ntBASIC3.26□□□□□ -1.89
RNF4P78317 Y_RNA.497-201ENST00000384447 98 ntBASIC3.26□□□□□ -1.89
RNF4P78317 MIR7-3-201ENST00000384898 110 ntBASIC3.26□□□□□ -1.89
RNF4P78317 MIR218-1-201ENST00000384999 110 ntBASIC3.26□□□□□ -1.89
RNF4P78317 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
RNF4P78317 RNU6-1328P-201ENST00000410938 106 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RPL30P4-201ENST00000429309 333 ntBASIC3.26□□□□□ -1.89
RNF4P78317 AL353705.1-201ENST00000433468 480 ntBASIC3.26□□□□□ -1.89
RNF4P78317 AL121890.1-201ENST00000435457 205 ntBASIC3.26□□□□□ -1.89
RNF4P78317 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RN7SL594P-201ENST00000470590 287 ntBASIC3.26□□□□□ -1.89
RNF4P78317 AC005840.1-201ENST00000498412 377 ntBASIC3.26□□□□□ -1.89
RNF4P78317 SCARNA8-201ENST00000515924 131 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RNA5SP272-201ENST00000516095 111 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RNU6-965P-201ENST00000516721 96 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RMST_8.1-201ENST00000610287 165 ntBASIC3.26□□□□□ -1.89
RNF4P78317 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
RNF4P78317 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.25□□□□□ -1.89
RNF4P78317 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
RNF4P78317 RNU6-103P-201ENST00000363686 107 ntBASIC3.25□□□□□ -1.89
RNF4P78317 Y_RNA.215-201ENST00000364204 112 ntBASIC3.25□□□□□ -1.89
RNF4P78317 RNU6-283P-201ENST00000364788 107 ntBASIC3.25□□□□□ -1.89
RNF4P78317 SNORA20B-201ENST00000384220 132 ntBASIC3.25□□□□□ -1.89
RNF4P78317 MIR300-201ENST00000401138 83 ntBASIC3.25□□□□□ -1.89
RNF4P78317 RNU6-57P-201ENST00000411348 103 ntBASIC3.25□□□□□ -1.89
RNF4P78317 EBAG9P1-201ENST00000418955 543 ntBASIC3.25□□□□□ -1.89
RNF4P78317 RPL23AP7-203ENST00000449021 469 ntBASIC3.25□□□□□ -1.89
RNF4P78317 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.25□□□□□ -1.89
RNF4P78317 RPS4XP2-201ENST00000458402 793 ntBASIC3.25□□□□□ -1.89
RNF4P78317 CENPBD1P1-201ENST00000464061 469 ntBASIC3.25□□□□□ -1.89
RNF4P78317 RN7SL293P-201ENST00000481765 281 ntBASIC3.25□□□□□ -1.89
RNF4P78317 RNU6-426P-201ENST00000516464 97 ntBASIC3.25□□□□□ -1.89
RNF4P78317 RNU6-586P-201ENST00000517265 104 ntBASIC3.25□□□□□ -1.89
RNF4P78317 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.25□□□□□ -1.89
RNF4P78317 AC109329.2-201ENST00000519658 482 ntBASIC3.25□□□□□ -1.89
RNF4P78317 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.25□□□□□ -1.89
RNF4P78317 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.25□□□□□ -1.89
RNF4P78317 AC019176.2-201ENST00000611579 315 ntBASIC3.25□□□□□ -1.89
RNF4P78317 Y_RNA.778-201ENST00000620203 90 ntBASIC3.25□□□□□ -1.89
RNF4P78317 AC091895.1-201ENST00000624494 256 ntBASIC3.25□□□□□ -1.89
RNF4P78317 AC068647.2-201ENST00000637380 353 ntBASIC3.25□□□□□ -1.89
RNF4P78317 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
RNF4P78317 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
RNF4P78317 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
RNF4P78317 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
RNF4P78317 RNA5SP50-201ENST00000363731 107 ntBASIC3.24□□□□□ -1.89
RNF4P78317 U8.7-201ENST00000364940 136 ntBASIC3.24□□□□□ -1.89
RNF4P78317 RNU6-407P-201ENST00000365280 104 ntBASIC3.24□□□□□ -1.89
RNF4P78317 SNORD116-13-201ENST00000384408 92 ntBASIC3.24□□□□□ -1.89
RNF4P78317 MIR873-201ENST00000401120 77 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AL162725.1-201ENST00000435405 301 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC074290.1-201ENST00000448883 135 ntBASIC3.24□□□□□ -1.89
RNF4P78317 RPS27P29-201ENST00000463110 252 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC114982.1-201ENST00000469402 321 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC025518.1-201ENST00000479856 347 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC117454.1-201ENST00000491120 168 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.24□□□□□ -1.89
RNF4P78317 RNU6-1337P-201ENST00000516525 95 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.24□□□□□ -1.89
RNF4P78317 MIR548AI-201ENST00000579940 88 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AC004832.5-201ENST00000608677 401 ntBASIC3.24□□□□□ -1.89
RNF4P78317 snoZ196.1-201ENST00000625269 89 ntBASIC3.24□□□□□ -1.89
RNF4P78317 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms