Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA1P55317 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA1P55317 AP000568.1-201ENST00000282964 442 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
FOXA1P55317 RNU6-968P-201ENST00000384076 107 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 MIR520E-201ENST00000384867 87 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RNU6-325P-201ENST00000411132 105 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AC004866.1-201ENST00000411748 78 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 MRPL35P3-201ENST00000421557 364 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RPS27P16-201ENST00000425758 201 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 CST2P1-201ENST00000425770 87 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 TOMM22P2-201ENST00000430735 237 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 MTCO3P29-201ENST00000432119 779 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.89□□□□□ -2.27
FOXA1P55317 AL135790.2-201ENST00000437701 267 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AL359672.1-201ENST00000442302 409 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 OR2AQ1P-201ENST00000451972 200 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RNU6-261P-201ENST00000459506 102 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 OR2A41P-201ENST00000473586 105 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AC079140.2-201ENST00000506193 142 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RNU2-34P-201ENST00000516534 121 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RNA5SP481-201ENST00000516814 122 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RNU6-902P-201ENST00000517212 91 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA1P55317 AC011604.1-201ENST00000545978 196 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AC026470.2-201ENST00000561492 181 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AL158211.1-201ENST00000566763 763 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 MIR3937-201ENST00000580135 106 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AP000907.4-201ENST00000604143 237 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 RN7SKP299-201ENST00000606679 301 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AL353149.1-201ENST00000610667 244 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 AC068792.1-201ENST00000621354 417 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.89□□□□□ -2.27
FOXA1P55317 MIR338-201ENST00000636369 67 ntBASIC0.89□□□□□ -2.27
FOXA1P55317 SNORD33-201ENST00000362761 85 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 Y_RNA.167-201ENST00000363735 109 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 RNU6-1322P-201ENST00000364309 107 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 SNORA25.8-201ENST00000364831 128 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 RNU6-1119P-201ENST00000384349 108 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 RNU6-331P-201ENST00000384724 107 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AF228730.1-201ENST00000397972 663 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AL161935.2-201ENST00000414627 60 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 MRPS10P2-201ENST00000431226 381 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AC069257.2-201ENST00000441819 155 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.88□□□□□ -2.27
FOXA1P55317 AC073910.1-201ENST00000445047 438 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 MTND3P16-201ENST00000452205 344 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 MTCO3P8-201ENST00000453691 755 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 RNU6-1208P-201ENST00000459588 107 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AF186996.7-201ENST00000492781 209 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 RNU6-948P-201ENST00000516374 107 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AC019176.1-201ENST00000518519 225 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
FOXA1P55317 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA1P55317 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA1P55317 FGF7P1-201ENST00000582820 288 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 OR5AK4P-201ENST00000635912 903 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 MIR6767-201ENST00000637302 66 ntBASIC0.88□□□□□ -2.27
FOXA1P55317 SNORA33-201ENST00000363664 130 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-214P-201ENST00000384130 107 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-975P-201ENST00000384296 105 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-1235P-201ENST00000384559 107 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 MIR521-1-201ENST00000384902 87 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 MIR514A2-201ENST00000385131 88 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 MIR514A3-201ENST00000385132 88 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AC027119.1-201ENST00000440877 241 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AC009237.7-201ENST00000447357 229 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 NFU1P2-201ENST00000448700 469 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.87□□□□□ -2.27
FOXA1P55317 snoU13.27-201ENST00000459278 104 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-498P-201ENST00000459468 107 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AC091885.1-201ENST00000506658 268 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-1332P-201ENST00000516666 104 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 RNU6-835P-201ENST00000516974 104 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.87□□□□□ -2.27
FOXA1P55317 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA1P55317 AC019288.1-201ENST00000557918 224 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.87□□□□□ -2.27
FOXA1P55317 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA1P55317 MTND1P15-201ENST00000579262 949 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 CPDP1-201ENST00000579660 283 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 MIR3611-201ENST00000584484 83 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AP003465.2-201ENST00000602571 373 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA1P55317 MIR8076-201ENST00000611401 83 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 FAM157A-202ENST00000615155 405 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 MIR6734-201ENST00000621166 68 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 AL359697.1-201ENST00000624879 587 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 MIR6863-201ENST00000636112 90 ntBASIC0.87□□□□□ -2.27
FOXA1P55317 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.87□□□□□ -2.27
FOXA1P55317 MTND5P26-201ENST00000426018 1752 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 snoU2-30.2-201ENST00000362805 70 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 SNORA4.2-201ENST00000365313 147 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 RNU6-1080P-201ENST00000383982 107 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 MIR487A-201ENST00000385009 80 ntBASIC0.86□□□□□ -2.27
FOXA1P55317 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms