Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.15□□□□□ -2.39
NUP98P52948 Y_RNA.576-201ENST00000384781 102 ntBASIC0.14□□□□□ -2.39
NUP98P52948 MIR329-1-201ENST00000385028 80 ntBASIC0.14□□□□□ -2.39
NUP98P52948 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.14□□□□□ -2.39
NUP98P52948 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.14□□□□□ -2.39
NUP98P52948 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.14□□□□□ -2.39
NUP98P52948 AC079382.1-201ENST00000493346 557 ntBASIC0.14□□□□□ -2.39
NUP98P52948 AC010587.1-201ENST00000505809 469 ntBASIC0.14□□□□□ -2.39
NUP98P52948 AC022868.1-201ENST00000517767 391 ntBASIC0.14□□□□□ -2.39
NUP98P52948 MTATP6P15-201ENST00000527233 835 ntBASIC0.14□□□□□ -2.39
NUP98P52948 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC0.14□□□□□ -2.39
NUP98P52948 FAM157A-202ENST00000615155 405 ntBASIC0.14□□□□□ -2.39
NUP98P52948 AL445984.1-201ENST00000637834 659 ntBASIC0.14□□□□□ -2.39
NUP98P52948 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
NUP98P52948 RNU6-1257P-201ENST00000384625 110 ntBASIC0.13□□□□□ -2.39
NUP98P52948 MIR549A-201ENST00000385268 96 ntBASIC0.13□□□□□ -2.39
NUP98P52948 AC245047.8-201ENST00000456455 284 ntBASIC0.13□□□□□ -2.39
NUP98P52948 RNU7-57P-201ENST00000459540 60 ntBASIC0.13□□□□□ -2.39
NUP98P52948 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.13□□□□□ -2.39
NUP98P52948 AC013244.3-201ENST00000605614 388 ntBASIC0.13□□□□□ -2.39
NUP98P52948 uc_338.11-201ENST00000619132 160 ntBASIC0.13□□□□□ -2.39
NUP98P52948 MIR103A2-201ENST00000362154 78 ntBASIC0.13□□□□□ -2.39
NUP98P52948 Y_RNA.302-201ENST00000364997 102 ntBASIC0.13□□□□□ -2.39
NUP98P52948 RNU6-1335P-201ENST00000365426 107 ntBASIC0.13□□□□□ -2.39
NUP98P52948 Y_RNA.504-201ENST00000384481 104 ntBASIC0.13□□□□□ -2.39
NUP98P52948 MIR518A1-201ENST00000385068 85 ntBASIC0.13□□□□□ -2.39
NUP98P52948 MIR208B-201ENST00000401172 77 ntBASIC0.13□□□□□ -2.39
NUP98P52948 AL034345.1-201ENST00000407768 123 ntBASIC0.13□□□□□ -2.39
NUP98P52948 RNU6-1186P-201ENST00000410429 97 ntBASIC0.13□□□□□ -2.39
NUP98P52948 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.13□□□□□ -2.39
NUP98P52948 HSPE1P23-201ENST00000509838 286 ntBASIC0.13□□□□□ -2.39
NUP98P52948 AC073539.2-201ENST00000597113 165 ntBASIC0.13□□□□□ -2.39
NUP98P52948 AL162730.1-201ENST00000605734 292 ntBASIC0.13□□□□□ -2.39
NUP98P52948 AC011155.2-201ENST00000623202 216 ntBASIC0.13□□□□□ -2.39
NUP98P52948 RNU6-349P-201ENST00000362402 107 ntBASIC0.12□□□□□ -2.39
NUP98P52948 Y_RNA.97-201ENST00000363094 102 ntBASIC0.12□□□□□ -2.39
NUP98P52948 RNA5SP368-201ENST00000364298 116 ntBASIC0.12□□□□□ -2.39
NUP98P52948 RNU6-336P-201ENST00000364891 107 ntBASIC0.12□□□□□ -2.39
NUP98P52948 Y_RNA.303-201ENST00000364998 94 ntBASIC0.12□□□□□ -2.39
NUP98P52948 Y_RNA.549-201ENST00000384657 102 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.12□□□□□ -2.39
NUP98P52948 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.12□□□□□ -2.39
NUP98P52948 AC119618.1-201ENST00000434191 222 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC074290.1-201ENST00000448883 135 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.12□□□□□ -2.39
NUP98P52948 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.12□□□□□ -2.39
NUP98P52948 SNORA31.10-201ENST00000516482 106 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC022616.6-201ENST00000520479 119 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.12□□□□□ -2.39
NUP98P52948 AC005771.1-201ENST00000585581 349 ntBASIC0.12□□□□□ -2.39
NUP98P52948 Z99497.2-201ENST00000603634 310 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC091805.2-201ENST00000603848 235 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AL357075.2-201ENST00000614906 189 ntBASIC0.12□□□□□ -2.39
NUP98P52948 AC068792.1-201ENST00000621354 417 ntBASIC0.12□□□□□ -2.39
NUP98P52948 U6.108-201ENST00000637764 58 ntBASIC0.12□□□□□ -2.39
NUP98P52948 RNY1P12-201ENST00000364251 105 ntBASIC0.11□□□□□ -2.39
NUP98P52948 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
NUP98P52948 SNORA75.2-201ENST00000391138 150 ntBASIC0.11□□□□□ -2.39
NUP98P52948 RNU6-1093P-201ENST00000391194 107 ntBASIC0.11□□□□□ -2.39
NUP98P52948 SNORA75.3-201ENST00000391231 150 ntBASIC0.11□□□□□ -2.39
NUP98P52948 MTND3P17-201ENST00000416968 344 ntBASIC0.11□□□□□ -2.39
NUP98P52948 MTND2P9-201ENST00000422293 931 ntBASIC0.11□□□□□ -2.39
NUP98P52948 MTCO2P12-201ENST00000427426 682 ntBASIC0.11□□□□□ -2.39
NUP98P52948 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.11□□□□□ -2.39
NUP98P52948 AC104332.1-201ENST00000440471 797 ntBASIC0.11□□□□□ -2.39
NUP98P52948 NFU1P2-201ENST00000448700 469 ntBASIC0.11□□□□□ -2.39
NUP98P52948 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.11□□□□□ -2.39
NUP98P52948 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.11□□□□□ -2.39
NUP98P52948 AC011195.1-201ENST00000578177 177 ntBASIC0.11□□□□□ -2.39
NUP98P52948 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.11□□□□□ -2.39
NUP98P52948 SNORA36.2-201ENST00000384004 127 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AL035398.1-201ENST00000430869 322 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.1□□□□□ -2.39
NUP98P52948 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.1□□□□□ -2.39
NUP98P52948 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.1□□□□□ -2.39
NUP98P52948 RNU6-1110P-201ENST00000516462 101 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AC103996.1-201ENST00000555468 102 ntBASIC0.1□□□□□ -2.39
NUP98P52948 PCMTD1P2-201ENST00000565017 355 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AC100812.1-201ENST00000607622 580 ntBASIC0.1□□□□□ -2.39
NUP98P52948 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.1□□□□□ -2.39
NUP98P52948 AC013437.2-201ENST00000639587 677 ntBASIC0.1□□□□□ -2.39
NUP98P52948 SNORA2.2-201ENST00000365473 135 ntBASIC0.1□□□□□ -2.39
NUP98P52948 RNU6-39P-201ENST00000384344 107 ntBASIC0.1□□□□□ -2.39
NUP98P52948 SNORA16.2-201ENST00000390991 127 ntBASIC0.1□□□□□ -2.39
NUP98P52948 SNORD111-201ENST00000408139 94 ntBASIC0.1□□□□□ -2.39
NUP98P52948 TIMM9P3-201ENST00000428659 274 ntBASIC0.1□□□□□ -2.39
NUP98P52948 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC0.1□□□□□ -2.39
NUP98P52948 RNU6-685P-201ENST00000517088 95 ntBASIC0.1□□□□□ -2.39
NUP98P52948 SUB1P2-201ENST00000556401 297 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AC004223.2-201ENST00000590309 544 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AL031667.3-201ENST00000620124 655 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AC006001.4-201ENST00000622243 395 ntBASIC0.1□□□□□ -2.39
NUP98P52948 AL078595.3-201ENST00000623815 1166 ntBASIC0.1□□□□□ -2.39
NUP98P52948 RNU6-700P-201ENST00000391043 107 ntBASIC0.09□□□□□ -2.39
NUP98P52948 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.39
NUP98P52948 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.09□□□□□ -2.39
NUP98P52948 RPS27AP14-201ENST00000422868 454 ntBASIC0.09□□□□□ -2.39
NUP98P52948 MED13P1-201ENST00000428342 171 ntBASIC0.09□□□□□ -2.39
NUP98P52948 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.09□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms