Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AP000654.2-201ENST00000605633 586 ntBASIC1.41□□□□□ -2.18
HOXA9P31269 AC084782.3-201ENST00000612282 578 ntBASIC1.41□□□□□ -2.18
HOXA9P31269 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.41□□□□□ -2.18
HOXA9P31269 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.41□□□□□ -2.18
HOXA9P31269 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
HOXA9P31269 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
HOXA9P31269 MIR424-201ENST00000362227 98 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 Y_RNA.332-201ENST00000365271 113 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 SNORA32.2-201ENST00000384049 122 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 MIR487A-201ENST00000385009 80 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 MIR549A-201ENST00000385268 96 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 SNORA40.6-201ENST00000391153 128 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
HOXA9P31269 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXA9P31269 FGF7P6-202ENST00000451282 293 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 AC079354.2-201ENST00000453523 154 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 PCMTD1P1-201ENST00000455560 355 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 AC130509.1-201ENST00000464158 433 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 AC004223.1-201ENST00000479840 271 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 RNU4-49P-201ENST00000516080 140 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 RNU6-273P-201ENST00000516937 96 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 AF235103.2-201ENST00000525753 346 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.4□□□□□ -2.19
HOXA9P31269 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
HOXA9P31269 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.4□□□□□ -2.19
HOXA9P31269 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.4□□□□□ -2.19
HOXA9P31269 AC018638.8-201ENST00000588755 281 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 PRR13P7-201ENST00000605538 430 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 AL133216.2-202ENST00000634512 349 ntBASIC1.4□□□□□ -2.19
HOXA9P31269 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
HOXA9P31269 Y_RNA.86-201ENST00000363020 111 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 Y_RNA.99-201ENST00000363138 105 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 Y_RNA.224-201ENST00000364308 111 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RNU6-203P-201ENST00000384038 104 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RNU6-968P-201ENST00000384076 107 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RNU6-933P-201ENST00000384424 107 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RNU6-790P-201ENST00000384479 105 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 MIR597-201ENST00000384968 97 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 MIR517A-201ENST00000385001 87 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RNA5SP494-201ENST00000410653 129 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXA9P31269 SNRPEP8-201ENST00000442866 260 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXA9P31269 HSPE1P24-201ENST00000450782 238 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RPL23AP75-201ENST00000491601 451 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXA9P31269 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXA9P31269 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXA9P31269 RNA5SP61-201ENST00000516453 100 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 RNU6-566P-201ENST00000516790 107 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 MTND4LP26-201ENST00000518144 282 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 AL160236.1-201ENST00000556317 195 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 AC090517.1-201ENST00000569307 266 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 AP003465.2-201ENST00000602571 373 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 AC016727.2-201ENST00000603988 621 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 CYP2C61P-201ENST00000604072 290 ntBASIC1.39□□□□□ -2.19
HOXA9P31269 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXA9P31269 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXA9P31269 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXA9P31269 RNU1-58P-201ENST00000362413 163 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 Y_RNA.67-201ENST00000362870 100 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 RNU1-76P-201ENST00000362903 159 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 Y_RNA.191-201ENST00000363972 113 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 SNORA18.2-201ENST00000383865 132 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AL357139.1-201ENST00000407792 426 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AL353572.1-201ENST00000442490 417 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXA9P31269 RNU7-14P-201ENST00000459331 62 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 RNU6-329P-201ENST00000459618 107 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 RPL36AP21-201ENST00000490372 323 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AC082651.2-201ENST00000496833 166 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 MTCO2P30-201ENST00000503662 364 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 RNU6-358P-201ENST00000516564 75 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 RNA5SP454-201ENST00000517231 127 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AP005660.1-201ENST00000522972 293 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.38□□□□□ -2.19
HOXA9P31269 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXA9P31269 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXA9P31269 MIR3169-201ENST00000578032 83 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AP001485.1-201ENST00000604799 199 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AC019193.3-201ENST00000609144 554 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AC009248.2-201ENST00000619826 254 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AC091895.1-201ENST00000624494 256 ntBASIC1.38□□□□□ -2.19
HOXA9P31269 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.38□□□□□ -2.19
HOXA9P31269 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
HOXA9P31269 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXA9P31269 RNA5SP493-201ENST00000364115 91 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 RNU6-306P-201ENST00000384617 107 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
HOXA9P31269 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXA9P31269 AC004866.1-201ENST00000411748 78 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 RPS26P42-201ENST00000413485 326 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 AC009161.1-201ENST00000417306 376 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 AC123900.1-201ENST00000420390 96 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 SDAD1P3-201ENST00000427380 333 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 Z82188.1-201ENST00000436709 154 ntBASIC1.37□□□□□ -2.19
HOXA9P31269 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXA9P31269 AL035666.1-201ENST00000446195 348 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms