Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.75□□□□□ -2.29
SHOX2O60902 AC010099.3-201ENST00000423896 409 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 RAB28P5-201ENST00000427490 651 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.75□□□□□ -2.29
SHOX2O60902 MTCO2P3-201ENST00000442543 421 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 SCARNA18-201ENST00000459004 134 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.75□□□□□ -2.29
SHOX2O60902 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 AC104458.1-201ENST00000608243 463 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 AC021506.2-201ENST00000612354 169 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 RNU6-17P-201ENST00000384245 107 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 RNU6-18P-201ENST00000384527 107 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 SNORD12-201ENST00000391002 90 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 RNA5SP323-201ENST00000391094 133 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.74□□□□□ -2.29
SHOX2O60902 MIR1253-201ENST00000408273 105 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 MIR1912-201ENST00000410389 80 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AC011233.1-201ENST00000422812 283 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AL593851.1-201ENST00000426171 157 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 MTND5P15-201ENST00000434246 349 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.74□□□□□ -2.29
SHOX2O60902 NFU1P2-201ENST00000448700 469 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
SHOX2O60902 RNU7-167P-201ENST00000459160 62 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AC005178.1-201ENST00000508392 440 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 ACA64.5-201ENST00000516207 127 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 SUMO2P16-201ENST00000519475 264 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AGGF1P4-201ENST00000568249 801 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AL929325.1-201ENST00000603096 117 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AC106800.4-201ENST00000614905 153 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 AP001506.1-201ENST00000615444 211 ntBASIC0.74□□□□□ -2.29
SHOX2O60902 Y_RNA.170-201ENST00000363746 110 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 RNU6-606P-201ENST00000384721 111 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 RNU6-1031P-201ENST00000384773 107 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 RNU2-29P-201ENST00000410423 189 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 RNU2-64P-201ENST00000411315 191 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.73□□□□□ -2.29
SHOX2O60902 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.73□□□□□ -2.29
SHOX2O60902 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.73□□□□□ -2.29
SHOX2O60902 AC009237.7-201ENST00000447357 229 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 SRRM1P2-201ENST00000464531 1192 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 TRBVA-201ENST00000498804 316 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 MRPS36P3-201ENST00000519284 130 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 MIR4711-201ENST00000578274 70 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 MIR4636-201ENST00000582271 80 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 MIR5006-201ENST00000583027 110 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 MIR4653-201ENST00000585107 83 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 AC245014.2-201ENST00000603689 287 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.73□□□□□ -2.29
SHOX2O60902 AC246785.4-201ENST00000605374 287 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 AP001596.2-201ENST00000608410 312 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 U2.17-201ENST00000611454 95 ntBASIC0.73□□□□□ -2.29
SHOX2O60902 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.73□□□□□ -2.29
SHOX2O60902 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
SHOX2O60902 HSBP1P2-201ENST00000299671 229 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 RNU4-79P-201ENST00000362764 141 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 SNORA33-201ENST00000363664 130 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 SNORD114-15-201ENST00000364687 72 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 SNORD114-24-201ENST00000365029 72 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.72□□□□□ -2.29
SHOX2O60902 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.72□□□□□ -2.29
SHOX2O60902 AC004386.2-201ENST00000441858 148 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.72□□□□□ -2.29
SHOX2O60902 MTND3P3-201ENST00000505004 126 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.72□□□□□ -2.29
SHOX2O60902 Z99497.2-201ENST00000603634 310 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 AL513534.2-201ENST00000603836 250 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 Z84480.1-201ENST00000605131 311 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 AC108706.1-201ENST00000611053 297 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 AL603839.4-201ENST00000624658 1005 ntBASIC0.72□□□□□ -2.29
SHOX2O60902 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
SHOX2O60902 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
SHOX2O60902 RNU6-222P-201ENST00000362438 107 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 RNU6-417P-201ENST00000384712 107 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 MIR200A-201ENST00000384875 90 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 MIR586-201ENST00000385035 97 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 MIR549A-201ENST00000385268 96 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 RNA5SP109-201ENST00000391010 116 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 RNU11-5P-201ENST00000391216 129 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 RNA5SP193-201ENST00000410353 107 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 PIGFP2-201ENST00000421400 651 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AC063976.4-201ENST00000421971 163 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AC004941.2-201ENST00000427009 228 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.71□□□□□ -2.3
SHOX2O60902 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.71□□□□□ -2.3
SHOX2O60902 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.71□□□□□ -2.3
SHOX2O60902 AC016717.1-201ENST00000448918 286 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 HSFY5P-201ENST00000453726 309 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AL033528.1-201ENST00000453780 140 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 SNORA31.2-201ENST00000516019 134 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 Y_RNA.700-201ENST00000516806 100 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AC106038.2-201ENST00000520706 568 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AC004817.2-201ENST00000561794 651 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 MIR548AB-201ENST00000584917 84 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AC068790.2-201ENST00000602601 557 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 AC011458.1-201ENST00000604034 617 ntBASIC0.71□□□□□ -2.3
SHOX2O60902 RNU6-85P-201ENST00000605989 107 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms