Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNA5SP100-201ENST00000410903 110 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 RNA5SP59-201ENST00000410922 110 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC004866.1-201ENST00000411748 78 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 RPS26P42-201ENST00000413485 326 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 UBE2V1P8-201ENST00000437166 265 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC079354.2-201ENST00000453523 154 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC010531.2-201ENST00000465012 153 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC097473.1-201ENST00000508142 408 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC011352.1-201ENST00000512300 793 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 RNU6-1088P-201ENST00000516850 104 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 SNORA31.24-201ENST00000517232 57 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC005786.1-201ENST00000588553 154 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 TCL6_2.1-201ENST00000615162 119 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 AC139792.2-201ENST00000624218 587 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 MTND5P10-201ENST00000603719 1809 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 Y_RNA.6-201ENST00000362350 114 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 RNU6-306P-201ENST00000384617 107 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AL033519.2-201ENST00000403958 392 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 Z82188.1-201ENST00000436709 154 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 MTND1P34-201ENST00000438556 671 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AC007395.1-201ENST00000451333 677 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AC027575.1-201ENST00000481064 460 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 RNU6-864P-201ENST00000516256 108 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 Y_RNA.675-201ENST00000516389 149 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 MIR4285-201ENST00000581001 85 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AC068790.6-201ENST00000602558 258 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AC010900.2-201ENST00000604508 210 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 RMST_6.1-201ENST00000611980 203 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 AL159152.1-201ENST00000635019 2587 ntBASIC1.67□□□□□ -2.14
VPS54Q9P1Q0 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 RNU6-482P-201ENST00000391068 107 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 MIR1283-1-201ENST00000408494 87 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 RNU4-62P-201ENST00000410125 130 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 AC009161.1-201ENST00000417306 376 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 MTCO3P46-201ENST00000425787 232 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 AC008834.1-201ENST00000511612 175 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 RRN3P3-201ENST00000549207 578 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 SUB1P4-201ENST00000566062 339 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 MIR5094-201ENST00000578766 85 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 AC124303.1-201ENST00000605703 360 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 AC083806.3-201ENST00000614016 455 ntBASIC1.66□□□□□ -2.14
VPS54Q9P1Q0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 RNA5SP118-201ENST00000410385 109 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 NCOR1P3-201ENST00000420479 303 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC108667.1-201ENST00000428618 249 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 HMGB1P18-201ENST00000438801 619 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC016717.1-201ENST00000448918 286 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC007215.1-201ENST00000464893 276 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 FO393415.2-201ENST00000480085 343 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC010409.1-201ENST00000487382 476 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 ACA59.1-201ENST00000515966 143 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 RNU6-970P-201ENST00000516312 107 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC026470.2-201ENST00000561492 181 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 MIR3124-201ENST00000582636 67 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 MIR4769-201ENST00000584126 77 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC006504.8-201ENST00000621046 635 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC068137.4-201ENST00000638485 296 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 ZNF204P-201ENST00000416749 2397 ntBASIC1.65□□□□□ -2.15
VPS54Q9P1Q0 MIR126-201ENST00000362291 85 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.157-201ENST00000363638 102 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 MIR32-201ENST00000384965 70 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 MIR300-201ENST00000401138 83 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 MTND4LP16-201ENST00000440828 295 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 DAP3P1-201ENST00000441522 278 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 RNU4-49P-201ENST00000516080 140 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AC007014.2-201ENST00000615581 479 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 SCARNA4-201ENST00000629045 128 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 AC027514.1-201ENST00000588561 1603 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms