Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNY1P14-201ENST00000384426 108 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 MIR561-201ENST00000385216 97 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
HDAC4P56524 RNA5SP213-201ENST00000391031 106 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 MIR190B-201ENST00000401119 79 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 AL355497.1-201ENST00000406262 551 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 SNORA3.2-201ENST00000408221 125 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.42□□□□□ -2.02
HDAC4P56524 MTCYBP10-201ENST00000424905 650 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 WARS2P1-201ENST00000429678 537 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 RPS15AP28-201ENST00000435088 386 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.42□□□□□ -2.02
HDAC4P56524 AL035666.1-201ENST00000446195 348 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 IFNA11P-201ENST00000446352 526 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.42□□□□□ -2.02
HDAC4P56524 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.42□□□□□ -2.02
HDAC4P56524 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.42□□□□□ -2.02
HDAC4P56524 RNU6-264P-201ENST00000517134 104 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.42□□□□□ -2.02
HDAC4P56524 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.42□□□□□ -2.02
HDAC4P56524 MIR5007-201ENST00000583098 95 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 RMST_6.1-201ENST00000611980 203 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 AC099654.10-201ENST00000640395 161 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 ZNF72P-201ENST00000425869 1908 ntBASIC2.42□□□□□ -2.02
HDAC4P56524 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.42□□□□□ -2.02
HDAC4P56524 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.41□□□□□ -2.02
HDAC4P56524 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
HDAC4P56524 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HDAC4P56524 RNU6-222P-201ENST00000362438 107 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 RNU6-1159P-201ENST00000362933 107 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 Y_RNA.106-201ENST00000363189 100 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 Y_RNA.148-201ENST00000363557 117 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 U3.9-201ENST00000363823 204 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 SNORA3A-201ENST00000364113 130 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 SNORD32B-201ENST00000364460 84 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 RNU1-148P-201ENST00000384472 162 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 RNA5SP425-201ENST00000410336 112 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 Y_RNA.597-201ENST00000410463 100 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 RNA5SP247-201ENST00000411181 105 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 AC092423.1-201ENST00000430165 186 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 AC005534.2-201ENST00000431047 433 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.41□□□□□ -2.02
HDAC4P56524 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.41□□□□□ -2.02
HDAC4P56524 RNU7-175P-201ENST00000515915 61 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 DEFB131C-201ENST00000528817 165 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 AC018630.3-201ENST00000542637 96 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 MIR3126-201ENST00000577443 74 ntBASIC2.41□□□□□ -2.02
HDAC4P56524 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.4□□□□□ -2.02
HDAC4P56524 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
HDAC4P56524 RNU1-23P-201ENST00000363361 144 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 SNORD115-8-201ENST00000363856 82 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 Y_RNA.238-201ENST00000364441 102 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 SNORD115-38-201ENST00000365037 82 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 SNORA22B-201ENST00000383876 138 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 RNU6-700P-201ENST00000391043 107 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MIR1302-11-201ENST00000408051 138 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MIR1302-9-201ENST00000408365 138 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MIR1302-10-201ENST00000408734 138 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 RNA5SP270-201ENST00000411361 118 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MCFD2P1-201ENST00000417812 300 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 CBX3P6-201ENST00000430257 527 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MTND4P19-201ENST00000446659 478 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.4□□□□□ -2.03
HDAC4P56524 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.4□□□□□ -2.03
HDAC4P56524 AC007215.1-201ENST00000464893 276 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AP000870.1-201ENST00000472927 406 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AC090255.1-201ENST00000495779 349 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 RPS29P21-201ENST00000496272 170 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 RNU4-77P-201ENST00000516692 156 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MIR514B-201ENST00000516774 80 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 RNU6-58P-201ENST00000517143 103 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.4□□□□□ -2.03
HDAC4P56524 EIF4A1P12-201ENST00000551910 141 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AC016727.2-201ENST00000603988 621 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 MIR1302-2-201ENST00000607096 138 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 SNORD58B-201ENST00000607313 66 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AC100812.1-201ENST00000607622 580 ntBASIC2.4□□□□□ -2.03
HDAC4P56524 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.4□□□□□ -2.03
HDAC4P56524 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.4□□□□□ -2.03
HDAC4P56524 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
HDAC4P56524 Y_RNA.28-201ENST00000362554 111 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 RNU4-42P-201ENST00000364738 142 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 Y_RNA.326-201ENST00000365176 113 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 RNU6-1011P-201ENST00000384668 107 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 MIR153-2-201ENST00000385225 87 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 RNU6-1093P-201ENST00000391194 107 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.39□□□□□ -2.03
HDAC4P56524 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HDAC4P56524 AC096644.2-201ENST00000429278 159 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 AL445305.1-201ENST00000432577 575 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 AL603825.1-201ENST00000438481 80 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 AC099799.1-201ENST00000439809 192 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 AL163540.1-201ENST00000485382 386 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 Y_RNA.661-201ENST00000516003 99 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 SNORD116.3-201ENST00000517176 78 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 RN7SKP295-201ENST00000517264 153 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 CYCSP26-201ENST00000534107 320 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 UBL5P4-201ENST00000562584 236 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms