Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-38P-201ENST00000384085 107 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU6-360P-201ENST00000390944 104 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 Y_RNA.582-201ENST00000391023 95 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AL117342.1-201ENST00000404861 406 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 MIR1283-1-201ENST00000408494 87 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 CDK8P2-201ENST00000415020 547 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC060773.1-201ENST00000421698 310 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 TPT1P7-201ENST00000458300 517 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC079140.3-201ENST00000511111 550 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC067942.3-201ENST00000512025 362 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNA5SP401-201ENST00000515920 127 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.92□□□□□ -2.26
FOXA1P55317 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.92□□□□□ -2.26
FOXA1P55317 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC0.92□□□□□ -2.26
FOXA1P55317 SCOCP1-201ENST00000554676 349 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.92□□□□□ -2.26
FOXA1P55317 MIR5692C1-201ENST00000585309 91 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 MIR3976-201ENST00000606807 139 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AP001330.5-201ENST00000607176 411 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC017083.3-201ENST00000609955 700 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC005562.2-201ENST00000618264 111 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AL121890.5-201ENST00000620848 304 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 AC139792.3-201ENST00000623525 224 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.92□□□□□ -2.26
FOXA1P55317 AC090582.1-201ENST00000636321 199 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.92□□□□□ -2.26
FOXA1P55317 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
FOXA1P55317 ICE2P2-201ENST00000483823 2787 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.91□□□□□ -2.26
FOXA1P55317 MIR302D-201ENST00000362275 68 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 Y_RNA.77-201ENST00000362962 107 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 SNORA63D-201ENST00000364359 132 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RNU4-20P-201ENST00000365601 151 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RNU6-1286P-201ENST00000383871 107 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 Y_RNA.409-201ENST00000383990 98 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RNU6-42P-201ENST00000384165 107 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 MIR549A-201ENST00000385268 96 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 DEFB108C-201ENST00000400154 252 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 MIR300-201ENST00000401138 83 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RNA5SP494-201ENST00000410653 129 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 TIMM9P3-201ENST00000428659 274 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 MTCO2P16-201ENST00000436962 677 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA1P55317 AC004386.2-201ENST00000441858 148 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.91□□□□□ -2.26
FOXA1P55317 U8.21-201ENST00000459536 136 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RPS26P55-201ENST00000471178 356 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.91□□□□□ -2.26
FOXA1P55317 AC010486.3-201ENST00000511602 785 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 AC011406.1-201ENST00000512440 370 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RNA5SP384-201ENST00000516615 116 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA1P55317 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.91□□□□□ -2.26
FOXA1P55317 AC104383.1-201ENST00000530297 370 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 MRPS36P4-201ENST00000534436 298 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.91□□□□□ -2.26
FOXA1P55317 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.91□□□□□ -2.26
FOXA1P55317 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.91□□□□□ -2.26
FOXA1P55317 MIR5006-201ENST00000583027 110 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 MIR4753-201ENST00000585119 83 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 RMST_3.1-201ENST00000611651 109 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 AC126177.8-201ENST00000618339 1015 ntBASIC0.91□□□□□ -2.26
FOXA1P55317 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA1P55317 FER-210ENST00000628534 558 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA1P55317 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA1P55317 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.26
FOXA1P55317 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
FOXA1P55317 Y_RNA.123-201ENST00000363338 102 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 SNORD1A-201ENST00000364968 72 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 SNORA69-201ENST00000383895 132 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 SNORA22-201ENST00000383907 134 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 SNORA70.7-201ENST00000384159 133 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 SNORA22C-201ENST00000384614 134 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 RNY3P9-201ENST00000384727 106 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.27
FOXA1P55317 RPL37P10-201ENST00000412884 288 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 RPS26P42-201ENST00000413485 326 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA1P55317 AC016717.1-201ENST00000448918 286 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA1P55317 SRRM1P2-201ENST00000464531 1192 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AC083798.1-201ENST00000472671 131 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 Y_RNA.654-201ENST00000497848 106 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA1P55317 AC092436.3-201ENST00000511788 257 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 SNORA19.2-201ENST00000516013 114 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 RNA5SP220-201ENST00000516298 104 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.9□□□□□ -2.27
FOXA1P55317 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA1P55317 AL157687.1-201ENST00000554853 619 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 HSPE1P19-201ENST00000603327 295 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AL078603.1-201ENST00000603824 313 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AL355802.3-201ENST00000607571 545 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AC104458.1-201ENST00000608243 463 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 AC092807.2-201ENST00000609367 243 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 TCL6_2.1-201ENST00000615162 119 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 RMST_2.1-201ENST00000617263 136 ntBASIC0.9□□□□□ -2.27
FOXA1P55317 BX322639.1-202ENST00000423987 2213 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 255.8 ms