Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
MSX2P35548 SNORA18.3-201ENST00000384122 132 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU6-1310P-201ENST00000384153 107 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU6-19P-201ENST00000384718 107 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AL357139.1-201ENST00000407792 426 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU2-49P-201ENST00000410666 184 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC004866.1-201ENST00000411748 78 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC096649.2-201ENST00000416186 393 ntBASIC3.02□□□□□ -1.93
MSX2P35548 CYCSP4-201ENST00000429682 331 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.02□□□□□ -1.93
MSX2P35548 RPS12P18-201ENST00000442381 270 ntBASIC3.02□□□□□ -1.93
MSX2P35548 SNORD105B-201ENST00000458770 79 ntBASIC3.02□□□□□ -1.93
MSX2P35548 snoU13.14-201ENST00000459372 104 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC107626.1-201ENST00000471084 183 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC104619.4-201ENST00000510773 249 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU1-95P-201ENST00000516357 160 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU1-128P-201ENST00000516704 160 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RN7SKP282-201ENST00000516824 299 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU2-12P-201ENST00000517216 168 ntBASIC3.02□□□□□ -1.93
MSX2P35548 SUMO2P18-201ENST00000518873 252 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.02□□□□□ -1.93
MSX2P35548 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.02□□□□□ -1.93
MSX2P35548 MIR3923-201ENST00000579521 83 ntBASIC3.02□□□□□ -1.93
MSX2P35548 RNU6-91P-201ENST00000607774 107 ntBASIC3.02□□□□□ -1.93
MSX2P35548 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.02□□□□□ -1.93
MSX2P35548 AC091953.5-201ENST00000622919 233 ntBASIC3.02□□□□□ -1.93
MSX2P35548 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.02□□□□□ -1.93
MSX2P35548 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
MSX2P35548 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
MSX2P35548 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.02□□□□□ -1.93
MSX2P35548 AP003122.5-201ENST00000527668 3766 ntBASIC3.01□□□□□ -1.93
MSX2P35548 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
MSX2P35548 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.01□□□□□ -1.93
MSX2P35548 RNU6-1010P-201ENST00000362757 107 ntBASIC3.01□□□□□ -1.93
MSX2P35548 Y_RNA.415-201ENST00000384012 112 ntBASIC3.01□□□□□ -1.93
MSX2P35548 RNU6-750P-201ENST00000390946 107 ntBASIC3.01□□□□□ -1.93
MSX2P35548 MIR1289-1-201ENST00000408836 144 ntBASIC3.01□□□□□ -1.93
MSX2P35548 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.01□□□□□ -1.93
MSX2P35548 AIMP1P2-201ENST00000425294 312 ntBASIC3.01□□□□□ -1.93
MSX2P35548 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.01□□□□□ -1.93
MSX2P35548 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.01□□□□□ -1.93
MSX2P35548 RN7SKP18-201ENST00000516005 275 ntBASIC3.01□□□□□ -1.93
MSX2P35548 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.01□□□□□ -1.93
MSX2P35548 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.01□□□□□ -1.93
MSX2P35548 AC105137.2-201ENST00000569073 466 ntBASIC3.01□□□□□ -1.93
MSX2P35548 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.01□□□□□ -1.93
MSX2P35548 SNRPGP20-201ENST00000604477 205 ntBASIC3.01□□□□□ -1.93
MSX2P35548 AC007179.3-201ENST00000604976 235 ntBASIC3.01□□□□□ -1.93
MSX2P35548 MIR7851-201ENST00000610611 160 ntBASIC3.01□□□□□ -1.93
MSX2P35548 PCGEM1.1-201ENST00000613431 131 ntBASIC3.01□□□□□ -1.93
MSX2P35548 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.01□□□□□ -1.93
MSX2P35548 UCA1.1-201ENST00000620952 75 ntBASIC3.01□□□□□ -1.93
MSX2P35548 AC000403.1-201ENST00000613696 3585 ntBASIC3.01□□□□□ -1.93
MSX2P35548 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSX2P35548 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSX2P35548 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3□□□□□ -1.93
MSX2P35548 AC092435.3-201ENST00000565538 3654 ntBASIC3□□□□□ -1.93
MSX2P35548 RNU4-15P-201ENST00000362613 141 ntBASIC3□□□□□ -1.93
MSX2P35548 RNU6-454P-201ENST00000364292 107 ntBASIC3□□□□□ -1.93
MSX2P35548 RNU6-81P-201ENST00000365608 104 ntBASIC3□□□□□ -1.93
MSX2P35548 DYNLT3P1-201ENST00000378574 347 ntBASIC3□□□□□ -1.93
MSX2P35548 SNORA5A-201ENST00000384111 134 ntBASIC3□□□□□ -1.93
MSX2P35548 Y_RNA.571-201ENST00000384753 98 ntBASIC3□□□□□ -1.93
MSX2P35548 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3□□□□□ -1.93
MSX2P35548 BTF3P11-201ENST00000426582 477 ntBASIC3□□□□□ -1.93
MSX2P35548 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3□□□□□ -1.93
MSX2P35548 Y_RNA.637-201ENST00000459424 114 ntBASIC3□□□□□ -1.93
MSX2P35548 RPL23AP70-201ENST00000483361 460 ntBASIC3□□□□□ -1.93
MSX2P35548 RNU6-436P-201ENST00000516171 114 ntBASIC3□□□□□ -1.93
MSX2P35548 AC026403.1-201ENST00000518938 295 ntBASIC3□□□□□ -1.93
MSX2P35548 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3□□□□□ -1.93
MSX2P35548 DEFB131C-201ENST00000528817 165 ntBASIC3□□□□□ -1.93
MSX2P35548 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3□□□□□ -1.93
MSX2P35548 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3□□□□□ -1.93
MSX2P35548 U3.45-201ENST00000607547 219 ntBASIC3□□□□□ -1.93
MSX2P35548 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3□□□□□ -1.93
MSX2P35548 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSX2P35548 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
MSX2P35548 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3□□□□□ -1.93
MSX2P35548 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
MSX2P35548 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSX2P35548 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
MSX2P35548 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
MSX2P35548 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.99□□□□□ -1.93
MSX2P35548 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
MSX2P35548 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.99□□□□□ -1.93
MSX2P35548 MAPK10-266ENST00000641066 6555 ntBASIC2.99□□□□□ -1.93
MSX2P35548 Y_RNA.329-201ENST00000365209 107 ntBASIC2.99□□□□□ -1.93
MSX2P35548 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
MSX2P35548 RNU6-1264P-201ENST00000383891 107 ntBASIC2.99□□□□□ -1.93
MSX2P35548 MIR483-201ENST00000385070 76 ntBASIC2.99□□□□□ -1.93
MSX2P35548 Y_RNA.580-201ENST00000391004 95 ntBASIC2.99□□□□□ -1.93
MSX2P35548 MIR320B2-201ENST00000408479 138 ntBASIC2.99□□□□□ -1.93
MSX2P35548 RN7SKP111-201ENST00000410349 271 ntBASIC2.99□□□□□ -1.93
MSX2P35548 RNA5SP504-201ENST00000410676 117 ntBASIC2.99□□□□□ -1.93
MSX2P35548 MTATP6P29-201ENST00000415057 132 ntBASIC2.99□□□□□ -1.93
MSX2P35548 HMGN2P31-201ENST00000432430 273 ntBASIC2.99□□□□□ -1.93
MSX2P35548 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.99□□□□□ -1.93
MSX2P35548 RPL23AP58-201ENST00000440453 469 ntBASIC2.99□□□□□ -1.93
MSX2P35548 RN7SL601P-201ENST00000471221 293 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms