Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
SHMT2P34897 AL589823.1-201ENST00000429577 183 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC004386.2-201ENST00000441858 148 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 SNRPGP13-201ENST00000442212 177 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 ATP5J2P3-201ENST00000451550 258 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC079354.2-201ENST00000453523 154 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 RN7SKP210-201ENST00000459176 261 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC007215.1-201ENST00000464893 276 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC087477.1-201ENST00000465747 340 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.38□□□□□ -2.19
SHMT2P34897 AC016957.1-201ENST00000534895 309 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.38□□□□□ -2.19
SHMT2P34897 TPRKBP2-201ENST00000565969 475 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 EIF1P4-201ENST00000572664 335 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC097065.2-201ENST00000608159 533 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC093783.1-201ENST00000612976 329 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AC083806.3-201ENST00000614016 455 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AL138726.1-201ENST00000614873 333 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 TCL6_2.1-201ENST00000615162 119 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.38□□□□□ -2.19
SHMT2P34897 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.38□□□□□ -2.19
SHMT2P34897 AC024614.3-201ENST00000637860 256 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SHMT2P34897 MIR424-201ENST00000362227 98 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 MIR126-201ENST00000362291 85 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 RNU6-623P-201ENST00000363143 105 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 Y_RNA.151-201ENST00000363566 112 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 Y_RNA.318-201ENST00000365131 97 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 MIR487A-201ENST00000385009 80 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 MIR300-201ENST00000401138 83 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 MTCO1P21-201ENST00000416634 589 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 BTF3P4-201ENST00000418852 495 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 AC245047.4-201ENST00000433189 144 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.37□□□□□ -2.19
SHMT2P34897 HMGB1P18-201ENST00000438801 619 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 AC009237.7-201ENST00000447357 229 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 AC009474.2-201ENST00000451383 136 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 MTND1P11-201ENST00000456661 876 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.37□□□□□ -2.19
SHMT2P34897 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.37□□□□□ -2.19
SHMT2P34897 MIR5006-201ENST00000583027 110 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.37□□□□□ -2.19
SHMT2P34897 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.37□□□□□ -2.19
SHMT2P34897 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.37□□□□□ -2.19
SHMT2P34897 SCARNA4-201ENST00000629045 128 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 AC068205.3-201ENST00000636385 468 ntBASIC1.37□□□□□ -2.19
SHMT2P34897 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.36□□□□□ -2.19
SHMT2P34897 RNU1-62P-201ENST00000362599 164 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU6-877P-201ENST00000383868 107 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU6-338P-201ENST00000383888 105 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 Y_RNA.402-201ENST00000383972 102 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU6-418P-201ENST00000384035 107 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU6-332P-201ENST00000391193 108 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 AL117342.1-201ENST00000404861 406 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.36□□□□□ -2.19
SHMT2P34897 RPL21P111-201ENST00000418453 477 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 C8orf59P1-201ENST00000429930 303 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.36□□□□□ -2.19
SHMT2P34897 AL603825.1-201ENST00000438481 80 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 MTCO3P8-201ENST00000453691 755 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU7-95P-201ENST00000459222 64 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RPL23AP75-201ENST00000491601 451 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.36□□□□□ -2.19
SHMT2P34897 AC067942.3-201ENST00000512025 362 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU6-720P-201ENST00000516363 108 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 RNU6-256P-201ENST00000516747 97 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.36□□□□□ -2.19
SHMT2P34897 MTND1P35-201ENST00000526739 508 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 AP000907.4-201ENST00000604143 237 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 AC069114.2-201ENST00000604699 304 ntBASIC1.36□□□□□ -2.19
SHMT2P34897 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.36□□□□□ -2.19
SHMT2P34897 AL161722.3-201ENST00000605789 2983 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 RNU6-862P-201ENST00000362804 105 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 Y_RNA.132-201ENST00000363421 102 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 Y_RNA.414-201ENST00000384011 101 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 RNU6-790P-201ENST00000384479 105 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 Y_RNA.554-201ENST00000384672 102 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 MIR30A-201ENST00000385092 71 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 RNU6-955P-201ENST00000410497 104 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 AP1B1P2-201ENST00000416196 106 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 ZNF885P-201ENST00000420174 1098 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 DAP3P1-201ENST00000441522 278 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 AC005908.1-201ENST00000468701 347 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 HMGN2P9-201ENST00000476875 229 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 RNU2-34P-201ENST00000516534 121 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 MIR4421-201ENST00000578133 69 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 MIR3672-201ENST00000584290 82 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 MIR4753-201ENST00000585119 83 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 AC023043.2-201ENST00000589678 1026 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 AC016925.2-201ENST00000605108 242 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 AL353149.1-201ENST00000610667 244 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 AC090617.10-201ENST00000624308 134 ntBASIC1.35□□□□□ -2.19
SHMT2P34897 BX322639.1-202ENST00000423987 2213 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 Y_RNA.100-201ENST00000363141 102 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 RNY4P14-201ENST00000363656 96 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 Y_RNA.212-201ENST00000364177 102 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 RNU4-40P-201ENST00000364351 143 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms