Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 JTBP1-201ENST00000441314 247 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC016717.1-201ENST00000448918 286 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.91□□□□□ -2.26
CPSF4O95639 AF186996.7-201ENST00000492781 209 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC011406.1-201ENST00000512440 370 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6-1332P-201ENST00000516666 104 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.91□□□□□ -2.26
CPSF4O95639 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.91□□□□□ -2.26
CPSF4O95639 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.91□□□□□ -2.26
CPSF4O95639 RRN3P3-201ENST00000549207 578 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.91□□□□□ -2.26
CPSF4O95639 CPDP1-201ENST00000579660 283 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 FGF7P1-201ENST00000582820 288 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 MIR4753-201ENST00000585119 83 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AP000907.4-201ENST00000604143 237 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC104458.1-201ENST00000608243 463 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 TCL6_2.1-201ENST00000615162 119 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
CPSF4O95639 AC097520.1-201ENST00000624435 385 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC091895.1-201ENST00000624494 256 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC095038.3-201ENST00000634439 195 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 OR5AK4P-201ENST00000635912 903 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.91□□□□□ -2.26
CPSF4O95639 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
CPSF4O95639 BX322639.1-202ENST00000423987 2213 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.9□□□□□ -2.26
CPSF4O95639 Y_RNA.51-201ENST00000362725 102 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 SNORA63D-201ENST00000364359 132 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 RNU6-522P-201ENST00000364497 107 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 SNORD26-201ENST00000384147 75 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 RNU6-360P-201ENST00000390944 104 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 RNU6-1068P-201ENST00000410958 103 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 EBAG9P1-201ENST00000418955 543 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.9□□□□□ -2.27
CPSF4O95639 AC245517.4-201ENST00000448601 281 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.9□□□□□ -2.27
CPSF4O95639 MTCO3P8-201ENST00000453691 755 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AC083904.1-201ENST00000487828 231 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.9□□□□□ -2.27
CPSF4O95639 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
CPSF4O95639 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.9□□□□□ -2.27
CPSF4O95639 AC026470.2-201ENST00000561492 181 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AC100830.2-201ENST00000581636 240 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AC245008.1-201ENST00000608123 476 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 MIR8076-201ENST00000611401 83 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AL359880.1-201ENST00000621879 266 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AC124864.2-201ENST00000624736 186 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 AC121333.1-201ENST00000567488 2709 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.9□□□□□ -2.27
CPSF4O95639 AC100821.1-201ENST00000523153 2479 ntBASIC0.9□□□□□ -2.27
CPSF4O95639 MIR302D-201ENST00000362275 68 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 Y_RNA.231-201ENST00000364358 102 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 RNU6-939P-201ENST00000384634 107 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 MIR487A-201ENST00000385009 80 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 RNU6-780P-201ENST00000391030 104 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 MIR450B-201ENST00000401182 78 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.89□□□□□ -2.27
CPSF4O95639 AC009237.7-201ENST00000447357 229 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 OR2AQ1P-201ENST00000451972 200 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 COX6CP14-201ENST00000469580 174 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 MTCO1P29-201ENST00000496868 288 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 RNU2-34P-201ENST00000516534 121 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 Y_RNA.693-201ENST00000516641 110 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 RNU6-89P-201ENST00000606519 100 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 AL353149.1-201ENST00000610667 244 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 AC073534.2-201ENST00000620377 381 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 MIR8063-201ENST00000621930 81 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.89□□□□□ -2.27
CPSF4O95639 MIR338-201ENST00000636369 67 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CPSF4O95639 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
CPSF4O95639 OR4G1P-203ENST00000641984 1631 ntBASIC0.89□□□□□ -2.27
CPSF4O95639 ICE2P2-201ENST00000483823 2787 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 SNORA33-201ENST00000363664 130 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 SNORD1A-201ENST00000364968 72 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 RNU6-53P-201ENST00000365367 106 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 Y_RNA.372-201ENST00000365599 102 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 RNU6-975P-201ENST00000384296 105 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 RNU6-784P-201ENST00000384330 106 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
CPSF4O95639 RNU6-482P-201ENST00000391068 107 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.88□□□□□ -2.27
CPSF4O95639 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.88□□□□□ -2.27
CPSF4O95639 MTCO1P20-201ENST00000425366 358 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 CST2P1-201ENST00000425770 87 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 MTCO3P29-201ENST00000432119 779 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 NFU1P2-201ENST00000448700 469 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.88□□□□□ -2.27
CPSF4O95639 AC007215.1-201ENST00000464893 276 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 RPS26P55-201ENST00000471178 356 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 AC099513.1-201ENST00000490423 301 ntBASIC0.88□□□□□ -2.27
CPSF4O95639 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 155.5 ms