Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 HSPE1P18-201ENST00000517602 280 ntBASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 AC023824.2-201ENST00000566185 400 ntBASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 MIR4300-201ENST00000581016 96 ntBASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 SNORD11B-201ENST00000607707 90 ntBASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC85CA6NKD9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.230-201ENST00000364348 109 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 RNU6-806P-201ENST00000365147 105 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 SNORA67.2-201ENST00000384300 149 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 FO393413.1-201ENST00000402892 195 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 RNA5SP425-201ENST00000410336 112 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 RNA5SP504-201ENST00000410676 117 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AC005002.2-201ENST00000438228 269 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AC009969.1-201ENST00000438726 172 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AL161788.1-201ENST00000441805 169 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AC090515.1-201ENST00000465295 476 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 RPL23AP67-201ENST00000465341 474 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 RNU2-44P-201ENST00000516795 194 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AP003733.2-201ENST00000529409 171 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AC108206.1-201ENST00000570186 4159 ntBASIC3.36□□□□□ -1.87
CCDC85CA6NKD9 AL513302.2-201ENST00000562313 1842 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.64-201ENST00000362845 102 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.222-201ENST00000364264 102 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 RNU6-702P-201ENST00000364982 107 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 RNA5SP240-201ENST00000365355 128 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.512-201ENST00000384518 102 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 MIR627-201ENST00000384979 97 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 MIR1294-201ENST00000408503 142 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 ELOCP21-201ENST00000412558 336 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 NDUFB4P10-201ENST00000452541 359 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 MIR5006-201ENST00000583027 110 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 MIR376A1-201ENST00000616574 68 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 U7.8-201ENST00000619968 63 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 AC068205.3-201ENST00000636385 468 ntBASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC85CA6NKD9 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AC068647.1-201ENST00000489539 2265 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.143-201ENST00000363520 106 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.796-201ENST00000364268 102 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 Y_RNA.799-201ENST00000364992 102 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 SNORA9.2-201ENST00000365361 133 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 RNU6-926P-201ENST00000384075 107 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AC117440.1-201ENST00000474107 571 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AP006245.1-201ENST00000522549 120 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AC018448.1-201ENST00000552843 316 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 AC023043.3-201ENST00000593113 385 ntBASIC3.34□□□□□ -1.87
CCDC85CA6NKD9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
CCDC85CA6NKD9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
CCDC85CA6NKD9 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.34□□□□□ -1.88
CCDC85CA6NKD9 FAM35CP-201ENST00000554755 2470 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 RNU6-961P-201ENST00000363893 105 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 Y_RNA.401-201ENST00000383965 117 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 AL390729.2-201ENST00000416137 156 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 AC006989.1-201ENST00000427212 131 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 UQCRBP2-201ENST00000447827 297 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 RPS23P5-201ENST00000495419 428 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 RRN3P3-201ENST00000549207 578 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 MIR486-1-201ENST00000612171 68 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 U6.104-201ENST00000637979 90 ntBASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC85CA6NKD9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 PWAR6-201ENST00000552334 4618 ntBASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 SNORD114-30-201ENST00000364448 72 ntBASIC3.32□□□□□ -1.88
CCDC85CA6NKD9 Y_RNA.376-201ENST00000365638 108 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms