Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 HMGN2P38-201ENST00000423806 265 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 HMGN2P19-201ENST00000425149 265 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AL445646.1-201ENST00000431784 216 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 PPP1R2P5-201ENST00000457256 603 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 snoU13.30-201ENST00000458951 104 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AC114982.1-201ENST00000469402 321 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 RNU2-34P-201ENST00000516534 121 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 RNU6-1198P-201ENST00000516904 67 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 MIR4273-201ENST00000582824 84 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 AC010928.2-201ENST00000588017 287 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 MIR6128-201ENST00000615528 109 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AC005296.1-201ENST00000616145 209 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS28Q9UK41 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS28Q9UK41 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS28Q9UK41 SNORD115-8-201ENST00000363856 82 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 SNORD115-38-201ENST00000365037 82 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 MIR487A-201ENST00000385009 80 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 MIR153-2-201ENST00000385225 87 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AL356776.1-201ENST00000406574 447 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AL139156.1-201ENST00000412785 841 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 RPL30P16-201ENST00000419341 429 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 MTCO3P46-201ENST00000425787 232 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 Z82188.1-201ENST00000436709 154 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 snoU13.15-201ENST00000459407 104 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 FO393415.2-201ENST00000480085 343 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 AC018710.1-201ENST00000506509 158 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AC116337.1-201ENST00000509680 687 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 RNVU1-2-201ENST00000516326 135 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 Y_RNA.682-201ENST00000516457 100 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 MIR5696-201ENST00000578474 85 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AC011712.1-201ENST00000588959 234 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 AC084782.3-201ENST00000612282 578 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.08□□□□□ -2.08
VPS28Q9UK41 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
VPS28Q9UK41 AL159152.1-201ENST00000635019 2587 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 Y_RNA.319-201ENST00000365138 92 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
VPS28Q9UK41 AL033519.2-201ENST00000403958 392 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 RNU6-174P-201ENST00000410406 106 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC004866.1-201ENST00000411748 78 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 MTND3P8-201ENST00000412909 339 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC009310.1-201ENST00000414414 451 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS28Q9UK41 RPL23AP42-201ENST00000471152 471 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 MTND5P5-201ENST00000503764 376 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC097473.1-201ENST00000508142 408 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC067942.3-201ENST00000512025 362 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS28Q9UK41 RRN3P3-201ENST00000549207 578 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 MIR4713-201ENST00000582691 75 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 MIR3935-201ENST00000583472 104 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC083806.3-201ENST00000614016 455 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 DUXAP9-208ENST00000622815 614 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC022513.1-201ENST00000624512 117 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 AC245060.5-201ENST00000610778 3293 ntBASIC2.07□□□□□ -2.08
VPS28Q9UK41 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.07□□□□□ -2.08
VPS28Q9UK41 RNA5SP160-201ENST00000364866 120 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 RNU6-245P-201ENST00000384020 107 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 Y_RNA.599-201ENST00000410489 109 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 AC243428.1-201ENST00000421099 264 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 USP9YP30-201ENST00000430729 455 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 AC074290.1-201ENST00000448883 135 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 ATP5J2P3-201ENST00000451550 258 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 RNU6-856P-201ENST00000516959 98 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS28Q9UK41 AC022254.1-201ENST00000567857 235 ntBASIC2.06□□□□□ -2.08
VPS28Q9UK41 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.06□□□□□ -2.08
VPS28Q9UK41 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.06□□□□□ -2.08
VPS28Q9UK41 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.06□□□□□ -2.08
VPS28Q9UK41 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
VPS28Q9UK41 AC092881.1-201ENST00000638218 2733 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 ZNF299P-201ENST00000406845 1804 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
VPS28Q9UK41 RNU6-137P-201ENST00000363680 108 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 RNU6-418P-201ENST00000384035 107 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 Y_RNA.490-201ENST00000384413 102 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 MIR586-201ENST00000385035 97 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 SUMO2P12-201ENST00000405924 140 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 RNU2-2P-201ENST00000410396 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 NCOR1P3-201ENST00000420479 303 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 SNORD5.1-201ENST00000458800 75 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 UBL5P3-201ENST00000475112 231 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 RNU6-344P-201ENST00000516635 111 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 MIR4448-201ENST00000584360 86 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms