Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PCMTD1P1-201ENST00000455560 355 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 RNU6-237P-201ENST00000515985 71 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 RNU6-1314P-201ENST00000517139 104 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 AC022254.1-201ENST00000567857 235 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 AC009033.1-201ENST00000624279 431 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 MIR340-201ENST00000362125 95 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 RNA5SP213-201ENST00000391031 106 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC009310.1-201ENST00000414414 451 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 OR2AQ1P-201ENST00000451972 200 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AF186996.7-201ENST00000492781 209 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC011352.1-201ENST00000512300 793 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 DEFB131C-201ENST00000528817 165 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC026470.2-201ENST00000561492 181 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC016727.2-201ENST00000603988 621 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AP000907.4-201ENST00000604143 237 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC005562.2-201ENST00000618264 111 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 AC137590.2-201ENST00000619709 240 ntBASIC1.66□□□□□ -2.14
LHX3Q9UBR4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
LHX3Q9UBR4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LHX3Q9UBR4 RNA5SP99-201ENST00000364020 114 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 RNU6-831P-201ENST00000384548 107 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 MIR517A-201ENST00000385001 87 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 MIR300-201ENST00000401138 83 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 AC009161.1-201ENST00000417306 376 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.65□□□□□ -2.15
LHX3Q9UBR4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.65□□□□□ -2.15
LHX3Q9UBR4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.65□□□□□ -2.15
LHX3Q9UBR4 RPS29P25-201ENST00000481709 171 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.65□□□□□ -2.15
LHX3Q9UBR4 TCL6_2.1-201ENST00000615162 119 ntBASIC1.65□□□□□ -2.15
LHX3Q9UBR4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.65□□□□□ -2.15
LHX3Q9UBR4 SNORD50.1-201ENST00000362987 71 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 Y_RNA.135-201ENST00000363439 95 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 SNORD116-11-201ENST00000383882 92 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 MIR487A-201ENST00000385009 80 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 SNORA17.3-201ENST00000391159 129 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 RNA5SP100-201ENST00000410903 110 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 RNA5SP59-201ENST00000410922 110 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 RN7SKP101-201ENST00000411376 320 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 NCOR1P3-201ENST00000420479 303 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC004386.2-201ENST00000441858 148 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 MTCO1P44-201ENST00000441935 243 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 PPP1R2P5-201ENST00000457256 603 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC010531.2-201ENST00000465012 153 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC087477.1-201ENST00000465747 340 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 SUMO2P18-201ENST00000518873 252 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 GNAI2P1-201ENST00000541815 315 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.64□□□□□ -2.15
LHX3Q9UBR4 MIR5006-201ENST00000583027 110 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 POLR3GP2-201ENST00000588366 668 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC010900.2-201ENST00000604508 210 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC019193.3-201ENST00000609144 554 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AC007014.2-201ENST00000615581 479 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 AL359697.1-201ENST00000624879 587 ntBASIC1.64□□□□□ -2.15
LHX3Q9UBR4 MTND5P9-201ENST00000503854 1755 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 RNU6-545P-201ENST00000362681 104 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 Y_RNA.157-201ENST00000363638 102 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 RNU6-306P-201ENST00000384617 107 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 RNA5SP118-201ENST00000410385 109 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 MTND1P4-201ENST00000435196 415 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AC007215.1-201ENST00000464893 276 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 RPL23AP75-201ENST00000491601 451 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 MTCO2P30-201ENST00000503662 364 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AC097473.1-201ENST00000508142 408 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 RNU6-864P-201ENST00000516256 108 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 RNU6-1088P-201ENST00000516850 104 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 SUB1P4-201ENST00000566062 339 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AC083806.3-201ENST00000614016 455 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AL353997.5-201ENST00000618886 171 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms