Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC079354.2-201ENST00000453523 154 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 RPS23P5-201ENST00000495419 428 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 MTCO2P30-201ENST00000503662 364 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.51□□□□□ -2.17
SKA3Q8IX90 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.51□□□□□ -2.17
SKA3Q8IX90 AC104581.2-201ENST00000572227 430 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 AP000907.4-201ENST00000604143 237 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 RPL17P51-201ENST00000605218 238 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 AC124303.1-201ENST00000605703 360 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 AC116312.1-201ENST00000606841 314 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.51□□□□□ -2.17
SKA3Q8IX90 AC007014.2-201ENST00000615581 479 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 SCARNA4-201ENST00000629045 128 ntBASIC1.51□□□□□ -2.17
SKA3Q8IX90 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SKA3Q8IX90 RNU6-1013P-201ENST00000384180 107 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 MIR487A-201ENST00000385009 80 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 SNORA26.9-201ENST00000391322 122 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.5□□□□□ -2.17
SKA3Q8IX90 EIF1P1-201ENST00000421436 341 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 MTND4LP16-201ENST00000440828 295 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.5□□□□□ -2.17
SKA3Q8IX90 AC010531.2-201ENST00000465012 153 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.5□□□□□ -2.17
SKA3Q8IX90 ACA59.1-201ENST00000515966 143 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 RNU6-1088P-201ENST00000516850 104 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 RNU6-250P-201ENST00000516958 103 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.5□□□□□ -2.17
SKA3Q8IX90 AC087441.2-201ENST00000529141 262 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 HSBP1P1-201ENST00000555205 166 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.5□□□□□ -2.17
SKA3Q8IX90 MIR5006-201ENST00000583027 110 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 AC019193.3-201ENST00000609144 554 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 WWP1P1-201ENST00000466609 2769 ntBASIC1.5□□□□□ -2.17
SKA3Q8IX90 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 RNA5SP363-201ENST00000365072 115 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 U8.10-201ENST00000384260 133 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 SNORA48.1-201ENST00000390879 135 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 CYCSP49-201ENST00000420810 319 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 NFU1P2-201ENST00000448700 469 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 RNA5SP57-201ENST00000459463 123 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 AP003465.2-201ENST00000602571 373 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 TCL6_2.1-201ENST00000615162 119 ntBASIC1.49□□□□□ -2.17
SKA3Q8IX90 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.49□□□□□ -2.17
SKA3Q8IX90 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
SKA3Q8IX90 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 CBX3P1-201ENST00000325243 554 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 RNU6-545P-201ENST00000362681 104 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 Y_RNA.86-201ENST00000363020 111 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 EIF4EP2-201ENST00000422816 654 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 MTATP6P13-201ENST00000438531 667 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC004386.2-201ENST00000441858 148 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 MTND1P17-201ENST00000448961 204 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC007395.1-201ENST00000451333 677 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 RNU1-131P-201ENST00000458943 161 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 RPL23AP75-201ENST00000491601 451 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC069439.1-201ENST00000494739 167 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 RNU4-49P-201ENST00000516080 140 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 RNVU1-2-201ENST00000516326 135 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 SNORA59B-202ENST00000578183 701 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 MIR4285-201ENST00000581001 85 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC018638.8-201ENST00000588755 281 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC060780.3-201ENST00000589464 80 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC080078.2-201ENST00000603766 501 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC084782.3-201ENST00000612282 578 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC009248.2-201ENST00000619826 254 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 U1.36-201ENST00000620684 176 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 AC022513.1-201ENST00000624512 117 ntBASIC1.48□□□□□ -2.17
SKA3Q8IX90 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.48□□□□□ -2.17
SKA3Q8IX90 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SKA3Q8IX90 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 MIR504-201ENST00000385065 83 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AL627390.1-201ENST00000396055 340 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC004866.1-201ENST00000411748 78 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 Z82188.1-201ENST00000436709 154 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 MTCO3P8-201ENST00000453691 755 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 RNU1-98P-201ENST00000458992 160 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 FO393415.2-201ENST00000480085 343 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 SNORA25.15-201ENST00000516487 89 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 RNU6-566P-201ENST00000516790 107 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 RNA5SP454-201ENST00000517231 127 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 401.2 ms