Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.32□□□□□ -2.04
COL28A1Q2UY09 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.32□□□□□ -2.04
COL28A1Q2UY09 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.32□□□□□ -2.04
COL28A1Q2UY09 CYCSP26-201ENST00000534107 320 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.32□□□□□ -2.04
COL28A1Q2UY09 SUB1P3-201ENST00000564581 315 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 MIR5194-201ENST00000582634 120 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 MIR5092-201ENST00000583139 88 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 AC100812.1-201ENST00000607622 580 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.48-201ENST00000362710 103 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 RNU1-76P-201ENST00000362903 159 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 RNU1-17P-201ENST00000363022 152 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.122-201ENST00000363331 96 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 RNU6-890P-201ENST00000384121 107 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 RNU1-148P-201ENST00000384472 162 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 MIR32-201ENST00000384965 70 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 RNU6-700P-201ENST00000391043 107 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 AL359511.1-201ENST00000402970 211 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 MTCO3P10-201ENST00000455912 772 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 AC107222.1-201ENST00000510899 637 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.675-201ENST00000516389 149 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 HSPE1P18-201ENST00000517602 280 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 AC021269.2-201ENST00000532318 330 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 AC126177.8-201ENST00000618339 1015 ntBASIC2.31□□□□□ -2.04
COL28A1Q2UY09 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL28A1Q2UY09 MIR337-201ENST00000362281 93 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.61-201ENST00000362835 102 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.187-201ENST00000363918 113 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 RNU6-234P-201ENST00000365229 104 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 MIR7-2-201ENST00000384970 110 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.3□□□□□ -2.04
COL28A1Q2UY09 SUMO1P4-201ENST00000429430 302 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AL035666.1-201ENST00000446195 348 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC011753.1-201ENST00000451001 220 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 RPL30P15-201ENST00000457129 321 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC068781.1-201ENST00000488231 618 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC093303.1-201ENST00000514549 295 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 RNU6-295P-201ENST00000516901 104 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC027288.2-201ENST00000553028 243 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC016727.2-201ENST00000603988 621 ntBASIC2.3□□□□□ -2.04
COL28A1Q2UY09 AC007336.1-201ENST00000576365 3828 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.29□□□□□ -2.04
COL28A1Q2UY09 MTND5P10-201ENST00000603719 1809 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 RNU6-797P-201ENST00000363101 109 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.315-201ENST00000365117 102 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.405-201ENST00000383979 100 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 RNU6-245P-201ENST00000384020 107 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.451-201ENST00000384200 100 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.524-201ENST00000384564 100 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.561-201ENST00000384694 100 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.577-201ENST00000384794 101 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 MIR499A-201ENST00000384903 122 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.29□□□□□ -2.04
COL28A1Q2UY09 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.29□□□□□ -2.04
COL28A1Q2UY09 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.29□□□□□ -2.04
COL28A1Q2UY09 RNU6-470P-201ENST00000515954 104 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 RNA5SP82-201ENST00000516707 92 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.706-201ENST00000516933 99 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 RNU6-58P-201ENST00000517143 103 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 RNU6-667P-201ENST00000517186 102 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.29□□□□□ -2.04
COL28A1Q2UY09 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.29□□□□□ -2.04
COL28A1Q2UY09 AC090517.1-201ENST00000569307 266 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 MYL12BP1-201ENST00000569826 507 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 CYP2C61P-201ENST00000604072 290 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 TCL6_2.1-201ENST00000615162 119 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 AC005562.2-201ENST00000618264 111 ntBASIC2.29□□□□□ -2.04
COL28A1Q2UY09 MTND5P6-201ENST00000422338 1798 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL28A1Q2UY09 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.58-201ENST00000362807 102 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.154-201ENST00000363624 102 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RNU5F-3P-201ENST00000363767 117 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RNY3P1-201ENST00000365085 102 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.319-201ENST00000365138 92 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RNY3-201ENST00000365484 102 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RNU6-1040P-201ENST00000383974 107 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.431-201ENST00000384086 102 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 MIR518E-201ENST00000385252 88 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 MIR190B-201ENST00000401119 79 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 MIR320B2-201ENST00000408479 138 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 SRIP3-201ENST00000413200 219 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 MTCO3P29-201ENST00000432119 779 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 AL353997.1-201ENST00000432936 108 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RPL23AP50-201ENST00000434149 455 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 RNU6-264P-201ENST00000517134 104 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.28□□□□□ -2.04
COL28A1Q2UY09 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms