Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 SNORD115-7-201ENST00000365306 82 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU6-1026P-201ENST00000384465 108 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN9AQ15858 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU7-125P-201ENST00000458760 62 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 U8.21-201ENST00000459536 136 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN9AQ15858 RAP1BP2-201ENST00000478270 544 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 SNORA31.4-201ENST00000516049 129 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 Z98751.3-201ENST00000604447 521 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 Z84480.1-201ENST00000605131 311 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AL121992.2-201ENST00000606262 256 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AC079248.2-201ENST00000623779 326 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AC022418.1-201ENST00000624118 445 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AL359697.1-201ENST00000624879 587 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 AL450472.1-202ENST00000637286 180 ntBASIC0.68□□□□□ -2.3
SCN9AQ15858 RNU1-36P-201ENST00000365130 165 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 RNU4-48P-201ENST00000365559 182 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 MIR19B1-201ENST00000384829 87 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 RNA5SP467-201ENST00000391274 118 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN9AQ15858 SNX2P2-201ENST00000424553 323 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN9AQ15858 PGBD4P5-201ENST00000445958 426 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 RNU7-138P-201ENST00000459479 64 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 MTND3P3-201ENST00000505004 126 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 SUMO2P16-201ENST00000519475 264 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 AL391840.1-201ENST00000571144 367 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
SCN9AQ15858 AP001506.1-201ENST00000615444 211 ntBASIC0.67□□□□□ -2.3
SCN9AQ15858 SNORD113-6-201ENST00000363345 75 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 RNU6-336P-201ENST00000364891 107 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 RNU6-541P-201ENST00000384709 110 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 SNORD70.1-201ENST00000391007 85 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AC098934.3-201ENST00000430450 190 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.66□□□□□ -2.3
SCN9AQ15858 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN9AQ15858 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.66□□□□□ -2.3
SCN9AQ15858 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.66□□□□□ -2.3
SCN9AQ15858 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN9AQ15858 RNU7-40P-201ENST00000516397 64 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 Y_RNA.159-201ENST00000363674 87 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 RNY4P34-201ENST00000364779 95 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 RNU6-968P-201ENST00000384076 107 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 RNU6-950P-201ENST00000384651 107 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
SCN9AQ15858 MIR300-201ENST00000401138 83 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 C1DP2-201ENST00000418167 426 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AL117339.3-201ENST00000418733 162 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 MTCO2P3-201ENST00000442543 421 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 OR2AQ1P-201ENST00000451972 200 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN9AQ15858 SNORD27.1-201ENST00000516319 72 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 RNU6-1220P-201ENST00000517126 108 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN9AQ15858 AC106754.1-201ENST00000562632 1513 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN9AQ15858 MIR4709-201ENST00000577272 72 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN9AQ15858 FGF7P1-201ENST00000582820 288 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 AC090616.2-202ENST00000584248 222 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 MIR4753-201ENST00000585119 83 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.66□□□□□ -2.3
SCN9AQ15858 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.66□□□□□ -2.3
SCN9AQ15858 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.66□□□□□ -2.3
SCN9AQ15858 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-505P-201ENST00000384427 107 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU2-29P-201ENST00000410423 189 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AC104850.1-201ENST00000435940 476 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 DYNLT3P2-201ENST00000442517 295 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-1037P-201ENST00000459571 107 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU7-94P-201ENST00000459576 63 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 GMFBP1-201ENST00000467831 427 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 HMGN2P9-201ENST00000476875 229 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN9AQ15858 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-856P-201ENST00000516959 98 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN9AQ15858 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC0.65□□□□□ -2.31
SCN9AQ15858 U2.17-201ENST00000611454 95 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 MIR8087-201ENST00000612745 78 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 OR5AK4P-201ENST00000635912 903 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-1317P-201ENST00000364582 104 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-439P-201ENST00000384188 106 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-45P-201ENST00000384471 107 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AC090960.1-201ENST00000421072 306 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AC010975.2-201ENST00000427781 588 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.65□□□□□ -2.31
SCN9AQ15858 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.65□□□□□ -2.31
SCN9AQ15858 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN9AQ15858 USP9YP12-201ENST00000450481 570 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN9AQ15858 RNU6-165P-201ENST00000517170 99 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 MIR4661-201ENST00000582720 75 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AP001836.1-201ENST00000604675 523 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 AC009509.4-201ENST00000619202 509 ntBASIC0.65□□□□□ -2.31
SCN9AQ15858 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SCN9AQ15858 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms