Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNU6-110P-201ENST00000384508 104 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 RPS29P13-201ENST00000402041 169 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 MTCO3P18-201ENST00000440206 761 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD3Q12873 MTCO3P7-201ENST00000510008 774 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AC024995.1-201ENST00000523014 93 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 MIR4305-201ENST00000583252 102 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 PCGEM1.1-201ENST00000613431 131 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AL450472.1-202ENST00000637286 180 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 MTND4P4-201ENST00000439033 1366 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
CHD3Q12873 RNU6-224P-201ENST00000384055 107 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 RNU6-541P-201ENST00000384709 110 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 MIR653-201ENST00000385279 96 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AL451046.2-201ENST00000403074 277 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AC092809.3-201ENST00000415453 231 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 RPL37P21-201ENST00000435890 276 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 EXOSC3P1-201ENST00000448649 500 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD3Q12873 RNU7-14P-201ENST00000459331 62 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
CHD3Q12873 SCARNA1-201ENST00000517138 166 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 SNORA25.17-201ENST00000517184 124 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 MTND3P19-201ENST00000603825 345 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AC022217.4-201ENST00000604389 163 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.26□□□□□ -2.37
CHD3Q12873 FAM157A-202ENST00000615155 405 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AC116165.2-201ENST00000616705 206 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 AC126544.2-201ENST00000625174 749 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 BX322639.1-202ENST00000423987 2213 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 Y_RNA.363-201ENST00000365529 113 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 RNU6-641P-201ENST00000384006 107 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 RNU6-413P-201ENST00000384115 107 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 RNU6-793P-201ENST00000384233 104 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MIR32-201ENST00000384965 70 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MTCO2P18-201ENST00000457151 658 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 RNU4-57P-201ENST00000515980 135 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 RNU6-922P-201ENST00000516753 99 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AC090572.1-201ENST00000519251 160 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MIR4802-201ENST00000581881 80 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AC022432.1-201ENST00000595739 310 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AC104465.1-201ENST00000611365 139 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD3Q12873 RNU5E-10P-201ENST00000363506 118 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MIR549A-201ENST00000385268 96 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MIR1284-201ENST00000408337 120 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 RPS27AP14-201ENST00000422868 454 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AL133396.1-201ENST00000432048 687 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MTCYBP1-201ENST00000454315 1119 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 MTCO2P6-201ENST00000463134 685 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AC016632.1-201ENST00000503994 196 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.25□□□□□ -2.37
CHD3Q12873 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
CHD3Q12873 TPRKBP2-201ENST00000565969 475 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AC008521.1-201ENST00000587471 187 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 Z99497.2-201ENST00000603634 310 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 AC096720.1-201ENST00000604441 183 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 Z99289.3-201ENST00000605586 594 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 CASC19-280ENST00000642102 1351 ntBASIC0.25□□□□□ -2.37
CHD3Q12873 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
CHD3Q12873 AC245060.5-201ENST00000610778 3293 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.24□□□□□ -2.37
CHD3Q12873 AL022718.1-201ENST00000412004 84 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 MTCO2P21-201ENST00000419780 677 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 MRPS18CP6-201ENST00000423587 223 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 AC244098.3-201ENST00000424803 96 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 STAG3L5P-204ENST00000443759 179 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD3Q12873 RNU6-947P-201ENST00000516264 106 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 RNU6-197P-201ENST00000516680 100 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 AL596327.1-201ENST00000603629 213 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.24□□□□□ -2.37
CHD3Q12873 AL359075.3-201ENST00000613288 217 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 AC008250.2-201ENST00000615261 205 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.24□□□□□ -2.37
CHD3Q12873 AC106754.2-201ENST00000623006 233 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.24□□□□□ -2.37
CHD3Q12873 AC023934.1-201ENST00000574529 2389 ntBASIC0.24□□□□□ -2.37
CHD3Q12873 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.23□□□□□ -2.37
CHD3Q12873 Y_RNA.287-201ENST00000364853 94 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 Y_RNA.330-201ENST00000365230 109 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 Y_RNA.576-201ENST00000384781 102 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 SNORA75.2-201ENST00000391138 150 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 SNORA75.3-201ENST00000391231 150 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AL355796.1-201ENST00000406706 323 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.23□□□□□ -2.37
CHD3Q12873 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD3Q12873 AC233266.1-201ENST00000454518 96 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC245047.8-201ENST00000456455 284 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AL049829.1-201ENST00000465411 156 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-685P-201ENST00000517088 95 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD3Q12873 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.23□□□□□ -2.37
CHD3Q12873 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.23□□□□□ -2.37
CHD3Q12873 MIR4753-201ENST00000585119 83 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AL390123.1-201ENST00000603216 237 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AL162730.1-201ENST00000605734 292 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AP001596.2-201ENST00000608410 312 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC242852.1-201ENST00000612151 96 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms