Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AL390123.1-201ENST00000603216 237 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC022217.4-201ENST00000604389 163 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC097065.2-201ENST00000608159 533 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC106800.4-201ENST00000614905 153 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AP001506.1-201ENST00000615444 211 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 AC068787.1-201ENST00000623908 691 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 U6.108-201ENST00000637764 58 ntBASIC0.77□□□□□ -2.29
VCX3AQ9NNX9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 Y_RNA.111-201ENST00000363248 100 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 SNORA7.1-201ENST00000363750 139 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 MIR100-201ENST00000385259 80 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 CYCSP49-201ENST00000420810 319 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC002429.1-201ENST00000437672 148 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 RPS4XP11-201ENST00000446897 772 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 GMFBP1-201ENST00000467831 427 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC105417.1-201ENST00000514691 285 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 RNU6-922P-201ENST00000516753 99 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC026470.2-201ENST00000561492 181 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 MIR4303-201ENST00000581299 66 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC234772.3-201ENST00000602277 528 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC011458.1-201ENST00000604034 617 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 AC106754.2-201ENST00000623006 233 ntBASIC0.76□□□□□ -2.29
VCX3AQ9NNX9 Y_RNA.124-201ENST00000363339 93 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-553P-201ENST00000364047 96 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-1305P-201ENST00000364353 104 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-456P-201ENST00000384493 107 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-297P-201ENST00000384636 107 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 SNORA12.1-201ENST00000390873 148 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 MIR1253-201ENST00000408273 105 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-57P-201ENST00000411348 103 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AC009237.7-201ENST00000447357 229 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AL033528.1-201ENST00000453780 140 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU7-125P-201ENST00000458760 62 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RPS29P27-201ENST00000463711 170 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 PSMC1P5-201ENST00000512850 177 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-197P-201ENST00000516680 100 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 RNU6-612P-201ENST00000516909 102 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AP000907.4-201ENST00000604143 237 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AL136370.1-201ENST00000608166 691 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AP001596.2-201ENST00000608410 312 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AF246928.1-201ENST00000623768 87 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AC079248.2-201ENST00000623779 326 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
VCX3AQ9NNX9 AC018630.2-201ENST00000534866 2403 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU5B-2P-201ENST00000363036 113 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 Y_RNA.363-201ENST00000365529 113 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU6-505P-201ENST00000384427 107 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU6-950P-201ENST00000384651 107 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AL031577.2-201ENST00000404133 280 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 BX295541.1-201ENST00000417774 250 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 PIGFP2-201ENST00000421400 651 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC063976.4-201ENST00000421971 163 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 CYCSP46-201ENST00000423569 204 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 CETN4P-201ENST00000432407 469 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 MTND5P15-201ENST00000434246 349 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC005002.2-201ENST00000438228 269 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU7-57P-201ENST00000459540 60 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 SNORA31.4-201ENST00000516049 129 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU6-759P-201ENST00000516740 103 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU6-548P-201ENST00000517083 115 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 RNU6-232P-201ENST00000517144 64 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC016256.1-201ENST00000547971 354 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC008015.1-201ENST00000555505 465 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AL391840.1-201ENST00000571144 367 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 MIR4653-201ENST00000585107 83 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC245014.2-201ENST00000603689 287 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AC246785.4-201ENST00000605374 287 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 MIR6078-201ENST00000611069 100 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AL050303.3-201ENST00000613704 284 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AL157834.3-201ENST00000615543 103 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 MIR8054-201ENST00000620877 86 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 AL359697.1-201ENST00000624879 587 ntBASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
VCX3AQ9NNX9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 RNU2-9P-201ENST00000410194 145 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 RNU6-1054P-201ENST00000411293 104 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 AC133104.1-201ENST00000429100 218 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 AC022364.2-201ENST00000457963 554 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 PDCD5P2-201ENST00000507570 312 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 MTND1P22-201ENST00000510572 951 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 RN7SKP265-201ENST00000516448 223 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 SNORA18.6-201ENST00000516792 115 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 RN7SKP219-201ENST00000516825 296 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms