Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 MIR514B-201ENST00000516774 80 ntBASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 FGF7P1-201ENST00000582820 288 ntBASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 AC009994.1-201ENST00000606889 253 ntBASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 AC093913.1-201ENST00000614178 329 ntBASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.97□□□□□ -2.09
RPF1Q9H9Y2 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AC009487.4-201ENST00000624969 3585 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 U3.9-201ENST00000363823 204 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 RNU6-26P-201ENST00000383985 107 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 RNU6-968P-201ENST00000384076 107 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 RNA5SP465-201ENST00000391195 109 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AL158823.1-201ENST00000418441 478 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AC093259.1-201ENST00000509755 300 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 RNU6-567P-201ENST00000516746 107 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 AC016256.1-201ENST00000547971 354 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 EIF4A1P12-201ENST00000551910 141 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 CASC19-280ENST00000642102 1351 ntBASIC1.96□□□□□ -2.1
RPF1Q9H9Y2 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 RNU6-1059P-201ENST00000363752 98 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 RNU6-1013P-201ENST00000384180 107 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 SNORD14D-201ENST00000384390 87 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 MIR487A-201ENST00000385009 80 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 MIR549A-201ENST00000385268 96 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 RNU6-1093P-201ENST00000391194 107 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 RNA5SP494-201ENST00000410653 129 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 MTCO3P46-201ENST00000425787 232 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AL353572.1-201ENST00000442490 417 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 PMCHL2-203ENST00000457791 237 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 RPS29P11-201ENST00000496507 171 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 ATP5EP1-201ENST00000510257 156 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.682-201ENST00000516457 100 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 DEFB131C-201ENST00000528817 165 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 MIR3935-201ENST00000583472 104 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 POLR3GP2-201ENST00000588366 668 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AL096840.1-201ENST00000603287 93 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AC124303.1-201ENST00000605703 360 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AC019193.3-201ENST00000609144 554 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AC084768.2-201ENST00000622736 221 ntBASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
RPF1Q9H9Y2 RNU6-1164P-201ENST00000364428 107 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 RNU6-234P-201ENST00000365229 104 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 DAP3P1-201ENST00000441522 278 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 HMGN2P18-201ENST00000450680 270 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 PPP1R2P5-201ENST00000457256 603 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 MRPS17P9-201ENST00000511924 393 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 MIR4790-201ENST00000577799 79 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 AP000654.2-201ENST00000605633 586 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 AC233981.2-201ENST00000611524 1614 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 AL359851.1-201ENST00000569460 4997 ntBASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
RPF1Q9H9Y2 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 RNU6-510P-201ENST00000391239 108 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 MIR1283-2-201ENST00000408621 87 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 MTND3P8-201ENST00000412909 339 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 CYCSP49-201ENST00000420810 319 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 BX510359.4-201ENST00000423750 193 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 RBMX2P4-201ENST00000441256 376 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 FO393415.2-201ENST00000480085 343 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 RPL23AP75-201ENST00000491601 451 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 MTND5P5-201ENST00000503764 376 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 RNA5SP458-201ENST00000516188 119 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 RNU6-1098P-201ENST00000516772 96 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC090517.1-201ENST00000569307 266 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 MIR4419B-201ENST00000577260 68 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 MIR4299-201ENST00000577899 72 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC011712.1-201ENST00000588959 234 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC008749.1-201ENST00000597650 306 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC243960.4-201ENST00000600532 288 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AC016727.2-201ENST00000603988 621 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AL773524.1-201ENST00000614065 229 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 184.2 ms