Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.13□□□□□ -2.07
USP28Q96RU2 AC073410.2-201ENST00000603240 332 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AC096772.1-201ENST00000609146 564 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 uc_338.20-201ENST00000621563 178 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AL160413.1-201ENST00000622780 310 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP28Q96RU2 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP28Q96RU2 MTND5P9-201ENST00000503854 1755 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
USP28Q96RU2 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
USP28Q96RU2 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
USP28Q96RU2 MIR369-201ENST00000362155 70 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 RNU6-1141P-201ENST00000364520 107 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 SNORA16.1-201ENST00000364597 132 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 RNU6-596P-201ENST00000365395 98 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 MIR487A-201ENST00000385009 80 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AL591034.2-201ENST00000402839 359 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AL356379.1-201ENST00000414105 126 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 MTCO2P27-201ENST00000420740 428 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.12□□□□□ -2.07
USP28Q96RU2 AC236972.2-201ENST00000434979 310 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC244670.1-201ENST00000436879 112 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC003989.2-201ENST00000440224 169 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.12□□□□□ -2.07
USP28Q96RU2 snoU13.6-201ENST00000458785 104 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC027575.1-201ENST00000481064 460 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AF186996.7-201ENST00000492781 209 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.12□□□□□ -2.07
USP28Q96RU2 HMGN1P13-201ENST00000505795 138 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 RNU5F-2P-201ENST00000516066 82 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 RNU2-19P-201ENST00000517288 84 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
USP28Q96RU2 AP002770.2-201ENST00000543613 532 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 MIR5696-201ENST00000578474 85 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 MIR4273-201ENST00000582824 84 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 MIR5690-201ENST00000583739 73 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC080078.3-201ENST00000605407 463 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 MIR5739-201ENST00000619803 80 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC090574.1-201ENST00000623186 233 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AP006437.1-201ENST00000641440 3685 ntBASIC2.12□□□□□ -2.07
USP28Q96RU2 AC002543.1-201ENST00000299783 1954 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 RNU6-1032P-201ENST00000384100 107 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 SNORA29-201ENST00000384183 140 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 Y_RNA.460-201ENST00000384255 102 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 RNU1-57P-201ENST00000384491 166 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 MIR559-201ENST00000385188 96 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 SNORA75.6-201ENST00000391318 127 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 RNA5SP508-201ENST00000411327 119 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 MRPS18CP6-201ENST00000423587 223 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 MTND1P14-201ENST00000427400 950 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 MTCO3P29-201ENST00000432119 779 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.11□□□□□ -2.07
USP28Q96RU2 AC007677.1-201ENST00000445757 515 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AL353752.1-201ENST00000454946 260 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 CYP2C59P-201ENST00000457790 269 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 RNA5SP233-201ENST00000459153 113 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AL121594.1-201ENST00000475906 575 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AC107032.1-201ENST00000485945 480 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 RPS29P11-201ENST00000496507 171 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.11□□□□□ -2.07
USP28Q96RU2 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.11□□□□□ -2.07
USP28Q96RU2 AC093249.1-201ENST00000567049 203 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 MIR4287-201ENST00000579398 78 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AC010928.2-201ENST00000588017 287 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 AL355297.2-201ENST00000604792 129 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 ZNF355P-201ENST00000427301 3216 ntBASIC2.11□□□□□ -2.07
USP28Q96RU2 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USP28Q96RU2 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.1□□□□□ -2.07
USP28Q96RU2 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USP28Q96RU2 Y_RNA.187-201ENST00000363918 113 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 RNU6-968P-201ENST00000384076 107 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 RN7SKP61-201ENST00000410642 295 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AL354751.2-201ENST00000415471 210 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AL590135.1-201ENST00000422215 156 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AL358453.1-201ENST00000422522 250 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 EIF4EP2-201ENST00000422816 654 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC019205.3-201ENST00000424573 156 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC009238.1-201ENST00000442165 424 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC016700.2-201ENST00000446011 156 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC009237.6-201ENST00000446969 424 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC104564.1-201ENST00000493028 407 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC015911.1-201ENST00000495111 156 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC114801.2-201ENST00000503825 781 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC021146.2-201ENST00000504736 556 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC022493.2-201ENST00000506122 481 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 RNU2-53P-201ENST00000516257 147 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 Y_RNA.701-201ENST00000516812 110 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.1□□□□□ -2.07
USP28Q96RU2 AC091544.4-201ENST00000555268 342 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.1□□□□□ -2.07
USP28Q96RU2 AC007792.1-201ENST00000623023 402 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 SNORD98-201ENST00000636377 67 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 CENPCP1-201ENST00000533085 2578 ntBASIC2.1□□□□□ -2.07
USP28Q96RU2 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.1□□□□□ -2.07
USP28Q96RU2 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USP28Q96RU2 snoU2_19.1-201ENST00000362361 80 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RNU6-874P-201ENST00000362390 105 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms