Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 Y_RNA.22-201ENST00000362492 102 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 SNORA36A-201ENST00000384221 132 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 SNORD116-13-201ENST00000384408 92 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 SNORA12.1-201ENST00000390873 148 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 SNORA75.2-201ENST00000391138 150 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 SNORA75.3-201ENST00000391231 150 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 RNU6-757P-201ENST00000410334 100 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC090960.1-201ENST00000421072 306 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 NFU1P2-201ENST00000448700 469 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC233266.1-201ENST00000454518 96 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 RPL39P39-201ENST00000455840 151 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 Y_RNA.638-201ENST00000459374 113 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AL049830.1-201ENST00000468034 425 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC112204.1-201ENST00000502591 103 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC010486.2-201ENST00000505572 483 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC091874.1-201ENST00000511402 339 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 SNORA70.12-201ENST00000516084 153 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC105185.1-201ENST00000518705 535 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 PRELID3BP2-201ENST00000605362 201 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AL360219.1-201ENST00000610230 366 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC242852.1-201ENST00000612151 96 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC073349.3-201ENST00000617616 186 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC243829.3-201ENST00000622177 108 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 AC244015.1-201ENST00000622301 99 ntBASIC0.31□□□□□ -2.36
CCDC42Q96M95 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.31□□□□□ -2.36
CCDC42Q96M95 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNA5SP432-201ENST00000362480 116 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNU6-179P-201ENST00000363350 107 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNU6-931P-201ENST00000363850 107 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 Y_RNA.302-201ENST00000364997 102 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNU6-1335P-201ENST00000365426 107 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNU6-1237P-201ENST00000384777 107 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 SNORA16.2-201ENST00000390991 127 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 AL451046.2-201ENST00000403074 277 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 AL034345.1-201ENST00000407768 123 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 AL117339.3-201ENST00000418733 162 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC42Q96M95 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNU6-1069P-201ENST00000516612 133 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
CCDC42Q96M95 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC42Q96M95 AC025627.3-201ENST00000582078 182 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 AC146944.4-201ENST00000602697 718 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC42Q96M95 U6.108-201ENST00000637764 58 ntBASIC0.3□□□□□ -2.36
CCDC42Q96M95 RNU6-199P-201ENST00000362954 107 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 RNU4-92P-201ENST00000363783 136 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 RNU4-48P-201ENST00000365559 182 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 MIR549A-201ENST00000385268 96 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 RNU6-440P-201ENST00000390882 105 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 AL355796.1-201ENST00000406706 323 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 MIR1253-201ENST00000408273 105 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 SNORD99-201ENST00000408612 74 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 RPS27AP14-201ENST00000422868 454 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.29□□□□□ -2.36
CCDC42Q96M95 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC42Q96M95 TAF9P1-201ENST00000445421 515 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 TAF9P2-201ENST00000454958 515 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC42Q96M95 RN7SKP12-201ENST00000516275 143 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 RNU1-142P-201ENST00000516682 145 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.29□□□□□ -2.36
CCDC42Q96M95 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC42Q96M95 AC243829.6-201ENST00000612652 106 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 AC006001.4-201ENST00000622243 395 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 AC068787.1-201ENST00000623908 691 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 SNORA43.4-201ENST00000629559 138 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 AL445984.1-201ENST00000637834 659 ntBASIC0.29□□□□□ -2.36
CCDC42Q96M95 RNU6-163P-201ENST00000384396 106 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 Y_RNA.576-201ENST00000384781 102 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 RNU6-1093P-201ENST00000391194 107 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 AL356583.2-201ENST00000426536 280 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.28□□□□□ -2.36
CCDC42Q96M95 AC022364.2-201ENST00000457963 554 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 AC079382.1-201ENST00000493346 557 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 Z99497.2-201ENST00000603634 310 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 MIR6516-201ENST00000630554 81 ntBASIC0.28□□□□□ -2.36
CCDC42Q96M95 Y_RNA.4-201ENST00000362333 112 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 RNU5E-10P-201ENST00000363506 118 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 Y_RNA.164-201ENST00000363709 102 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.27□□□□□ -2.37
CCDC42Q96M95 RNU6-116P-201ENST00000384042 109 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 MRPL42P3-201ENST00000401492 326 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 RNU2-8P-201ENST00000410727 190 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 ELOCP4-201ENST00000420090 333 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 AC245047.3-201ENST00000429428 127 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.27□□□□□ -2.37
CCDC42Q96M95 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC42Q96M95 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC42Q96M95 U7.7-201ENST00000459276 60 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 MTND4LP18-201ENST00000526864 291 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 AL137100.2-201ENST00000555786 315 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 AL162424.1-201ENST00000602325 221 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 AP001836.1-201ENST00000604675 523 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.27□□□□□ -2.37
CCDC42Q96M95 AL359075.3-201ENST00000613288 217 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms