Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
NPAS3Q8IXF0 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
NPAS3Q8IXF0 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
NPAS3Q8IXF0 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
NPAS3Q8IXF0 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
NPAS3Q8IXF0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RNU6-674P-201ENST00000363831 107 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RNU4-36P-201ENST00000364294 144 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RNU6-178P-201ENST00000384631 104 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 MIR548B-201ENST00000385247 97 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 MIR325-201ENST00000385260 98 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 MT-TI-201ENST00000387365 69 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 MIR759-201ENST00000390224 91 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RNU6-644P-201ENST00000391155 98 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 NDUFB4P6-201ENST00000436819 366 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RPL39P25-201ENST00000449384 154 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 AC096725.1-201ENST00000514266 313 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 SNORD77.4-201ENST00000516158 81 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RNU7-116P-201ENST00000516940 62 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 CYP4A43P-201ENST00000568156 121 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 RPL23AP91-201ENST00000569211 455 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 MIR3923-201ENST00000579521 83 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 AC091167.4-201ENST00000605079 184 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 AC009093.8-201ENST00000641769 292 ntBASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
NPAS3Q8IXF0 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 AP002088.1-201ENST00000382740 395 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 SNORA18.2-201ENST00000383865 132 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 SNORA1-201ENST00000384107 130 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 SNORA5A-201ENST00000384111 134 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 HLA-N-201ENST00000437516 135 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 PRSS3P4-201ENST00000453323 162 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 PPIAP15-201ENST00000479662 484 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 RNU1-95P-201ENST00000516357 160 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 RNU6-63P-201ENST00000516690 95 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 RNU1-128P-201ENST00000516704 160 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 IGHVIII-67-2-201ENST00000519849 88 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 CKS1BP7-201ENST00000522230 235 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 AL365205.2-201ENST00000594586 68 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 MIR432-201ENST00000606207 94 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 TCL6_2.1-201ENST00000615162 119 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 Pinc.1-201ENST00000616452 154 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 Z82217.1-201ENST00000625157 8149 ntBASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
NPAS3Q8IXF0 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AL356292.1-201ENST00000283110 373 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNA5SP399-201ENST00000364003 117 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNU6-1280P-201ENST00000365211 107 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNA5SP235-201ENST00000365411 114 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RPL23AP82-202ENST00000427528 469 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RPL23AP7-203ENST00000449021 469 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNU7-171P-201ENST00000459581 62 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 CENPBD1P1-201ENST00000464061 469 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNU6-581P-201ENST00000516214 105 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNU6-113P-201ENST00000516653 101 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNY4P20-201ENST00000516678 93 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 RNU6-1149P-201ENST00000516810 97 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AC022790.1-201ENST00000522872 204 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AC027176.1-201ENST00000560204 514 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 MIR3921-201ENST00000577308 85 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AC012468.1-201ENST00000604888 430 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AC107294.3-201ENST00000609211 526 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AC012314.7-201ENST00000619693 93 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 MIR7702-201ENST00000621931 59 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 AC002064.3-201ENST00000623448 346 ntBASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPAS3Q8IXF0 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms