Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 RNU6-470P-201ENST00000515954 104 ntBASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 EIF4A1P12-201ENST00000551910 141 ntBASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 SNORD53-201ENST00000579969 78 ntBASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 AL670379.2-201ENST00000604983 252 ntBASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 AC009831.4-201ENST00000620744 325 ntBASIC2.6□□□□□ -1.99
SYNE3Q6ZMZ3 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 Y_RNA.48-201ENST00000362710 103 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 RNU6-944P-201ENST00000364023 107 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 Y_RNA.577-201ENST00000384794 101 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 MTCYBP10-201ENST00000424905 650 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 snoU13.6-201ENST00000458785 104 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 AC022493.2-201ENST00000506122 481 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 RNA5SP200-201ENST00000516360 103 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 PRELID2P1-201ENST00000552837 301 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 SNRPGP18-201ENST00000553000 214 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 AC027288.2-201ENST00000553028 243 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 MIR6873-201ENST00000622788 63 ntBASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.59□□□□□ -1.99
SYNE3Q6ZMZ3 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.59□□□□□ -2
SYNE3Q6ZMZ3 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.59□□□□□ -2
SYNE3Q6ZMZ3 MTND4P29-201ENST00000503122 1372 ntBASIC2.59□□□□□ -2
SYNE3Q6ZMZ3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
SYNE3Q6ZMZ3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
SYNE3Q6ZMZ3 RNU6-490P-201ENST00000362985 107 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.146-201ENST00000363549 102 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 U3.9-201ENST00000363823 204 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 RNU6-1032P-201ENST00000384100 107 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 RNU6-378P-201ENST00000384324 107 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 MIR153-2-201ENST00000385225 87 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.579-201ENST00000390939 94 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 RNU2-63P-201ENST00000410792 194 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 AL135786.1-201ENST00000415892 214 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 AC090574.1-201ENST00000623186 233 ntBASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
SYNE3Q6ZMZ3 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.112-201ENST00000363250 102 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.813-201ENST00000364639 102 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.463-201ENST00000384271 102 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 MIR208B-201ENST00000401172 77 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 RNU2-48P-201ENST00000410694 191 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AL356320.1-201ENST00000429616 163 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 MTCO3P29-201ENST00000432119 779 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AL353997.1-201ENST00000432936 108 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 RNU7-26P-201ENST00000458980 63 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AC104435.1-201ENST00000483483 166 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AC068781.1-201ENST00000488231 618 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AC090096.1-201ENST00000489168 390 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AC018868.1-201ENST00000491307 315 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 RNU7-175P-201ENST00000515915 61 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 RNU6-976P-201ENST00000516086 111 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AC004584.2-201ENST00000570407 410 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 7SK.7-201ENST00000603504 247 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 RPL17P51-201ENST00000605218 238 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AL080274.1-201ENST00000605565 220 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AC100812.1-201ENST00000607622 580 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 AL590808.1-201ENST00000618696 141 ntBASIC2.57□□□□□ -2
SYNE3Q6ZMZ3 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 RNU6-874P-201ENST00000362390 105 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 RNU1-23P-201ENST00000363361 144 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 SNORA38-201ENST00000363946 132 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.252-201ENST00000364556 101 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.405-201ENST00000383979 100 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.419-201ENST00000384041 102 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.451-201ENST00000384200 100 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.524-201ENST00000384564 100 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.561-201ENST00000384694 100 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 RNA5SP213-201ENST00000391031 106 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 SNORA48.3-201ENST00000391081 134 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 RNU1-139P-201ENST00000391307 165 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.597-201ENST00000410463 100 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 AL590556.1-201ENST00000423231 483 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 IFNA11P-201ENST00000446352 526 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 AC026470.2-201ENST00000561492 181 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 AC080078.3-201ENST00000605407 463 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 AC090517.3-201ENST00000625170 141 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 BX322639.1-202ENST00000423987 2213 ntBASIC2.56□□□□□ -2
SYNE3Q6ZMZ3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 RNU1-76P-201ENST00000362903 159 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 RNU6-1159P-201ENST00000362933 107 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.197-201ENST00000364004 102 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms