Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RPS29P27-201ENST00000463711 170 ntBASIC1.32□□□□□ -2.2
RFX3P48380 AC025465.4-201ENST00000513422 638 ntBASIC1.32□□□□□ -2.2
RFX3P48380 RNU6-405P-201ENST00000516637 110 ntBASIC1.32□□□□□ -2.2
RFX3P48380 SNORD60.2-201ENST00000516883 86 ntBASIC1.32□□□□□ -2.2
RFX3P48380 AP005597.4-201ENST00000526762 229 ntBASIC1.32□□□□□ -2.2
RFX3P48380 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.32□□□□□ -2.2
RFX3P48380 SCOCP1-201ENST00000554676 349 ntBASIC1.32□□□□□ -2.2
RFX3P48380 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.32□□□□□ -2.2
RFX3P48380 AC010620.1-201ENST00000601088 1102 ntBASIC1.32□□□□□ -2.2
RFX3P48380 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.32□□□□□ -2.2
RFX3P48380 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.31□□□□□ -2.2
RFX3P48380 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
RFX3P48380 Y_RNA.4-201ENST00000362333 112 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RNU6-562P-201ENST00000362731 107 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RNU6-414P-201ENST00000363705 104 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RNU4-13P-201ENST00000364019 141 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RNU6-1329P-201ENST00000365664 107 ntBASIC1.31□□□□□ -2.2
RFX3P48380 Y_RNA.381-201ENST00000365666 102 ntBASIC1.31□□□□□ -2.2
RFX3P48380 SNORA69-201ENST00000383895 132 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.31□□□□□ -2.2
RFX3P48380 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
RFX3P48380 RPS26P42-201ENST00000413485 326 ntBASIC1.31□□□□□ -2.2
RFX3P48380 TIMM9P3-201ENST00000428659 274 ntBASIC1.31□□□□□ -2.2
RFX3P48380 C8orf59P1-201ENST00000429930 303 ntBASIC1.31□□□□□ -2.2
RFX3P48380 UBE2V1P8-201ENST00000437166 265 ntBASIC1.31□□□□□ -2.2
RFX3P48380 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.31□□□□□ -2.2
RFX3P48380 AL359672.1-201ENST00000442302 409 ntBASIC1.31□□□□□ -2.2
RFX3P48380 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.31□□□□□ -2.2
RFX3P48380 RPL9P9-202ENST00000466501 579 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RPL26P26-201ENST00000480251 434 ntBASIC1.31□□□□□ -2.2
RFX3P48380 RNU6-323P-201ENST00000521915 107 ntBASIC1.31□□□□□ -2.2
RFX3P48380 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.31□□□□□ -2.2
RFX3P48380 SNORA59B-202ENST00000578183 701 ntBASIC1.31□□□□□ -2.2
RFX3P48380 MIR4422-201ENST00000581938 83 ntBASIC1.31□□□□□ -2.2
RFX3P48380 AC097520.1-201ENST00000624435 385 ntBASIC1.31□□□□□ -2.2
RFX3P48380 AC095038.3-201ENST00000634439 195 ntBASIC1.31□□□□□ -2.2
RFX3P48380 MTND5P26-201ENST00000426018 1752 ntBASIC1.31□□□□□ -2.2
RFX3P48380 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.31□□□□□ -2.2
RFX3P48380 AC121333.1-201ENST00000567488 2709 ntBASIC1.3□□□□□ -2.2
RFX3P48380 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
RFX3P48380 MIR302D-201ENST00000362275 68 ntBASIC1.3□□□□□ -2.2
RFX3P48380 RNU1-62P-201ENST00000362599 164 ntBASIC1.3□□□□□ -2.2
RFX3P48380 Y_RNA.132-201ENST00000363421 102 ntBASIC1.3□□□□□ -2.2
RFX3P48380 RNU6-1085P-201ENST00000363576 107 ntBASIC1.3□□□□□ -2.2
RFX3P48380 MIR300-201ENST00000401138 83 ntBASIC1.3□□□□□ -2.2
RFX3P48380 MIR1267-201ENST00000408723 78 ntBASIC1.3□□□□□ -2.2
RFX3P48380 RNU4-62P-201ENST00000410125 130 ntBASIC1.3□□□□□ -2.2
RFX3P48380 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.3□□□□□ -2.2
RFX3P48380 SDAD1P3-201ENST00000427380 333 ntBASIC1.3□□□□□ -2.2
RFX3P48380 HSPE1P9-201ENST00000440046 311 ntBASIC1.3□□□□□ -2.2
RFX3P48380 RNU6-1208P-201ENST00000459588 107 ntBASIC1.3□□□□□ -2.2
RFX3P48380 SRRM1P2-201ENST00000464531 1192 ntBASIC1.3□□□□□ -2.2
RFX3P48380 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.3□□□□□ -2.2
RFX3P48380 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.3□□□□□ -2.2
RFX3P48380 HMGN1P13-201ENST00000505795 138 ntBASIC1.3□□□□□ -2.2
RFX3P48380 SNORA19.2-201ENST00000516013 114 ntBASIC1.3□□□□□ -2.2
RFX3P48380 RNA5SP437-201ENST00000517249 129 ntBASIC1.3□□□□□ -2.2
RFX3P48380 AC026470.2-201ENST00000561492 181 ntBASIC1.3□□□□□ -2.2
RFX3P48380 AC100830.2-201ENST00000581636 240 ntBASIC1.3□□□□□ -2.2
RFX3P48380 MIR5692C1-201ENST00000585309 91 ntBASIC1.3□□□□□ -2.2
RFX3P48380 AL359821.1-201ENST00000605519 182 ntBASIC1.3□□□□□ -2.2
RFX3P48380 AL357078.3-201ENST00000607528 618 ntBASIC1.3□□□□□ -2.2
RFX3P48380 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.3□□□□□ -2.2
RFX3P48380 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.3□□□□□ -2.2
RFX3P48380 AC064836.2-201ENST00000609491 462 ntBASIC1.3□□□□□ -2.2
RFX3P48380 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.3□□□□□ -2.2
RFX3P48380 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
RFX3P48380 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
RFX3P48380 Y_RNA.378-201ENST00000365652 113 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RNU6-259P-201ENST00000383999 107 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RNU6-214P-201ENST00000384130 107 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RNU6-1093P-201ENST00000391194 107 ntBASIC1.29□□□□□ -2.2
RFX3P48380 EIF4E2P1-201ENST00000393781 255 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RNU6-321P-201ENST00000410912 106 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AC245047.4-201ENST00000433189 144 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AC009474.2-201ENST00000451383 136 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RPS29P23-201ENST00000458635 123 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RPS26P55-201ENST00000471178 356 ntBASIC1.29□□□□□ -2.2
RFX3P48380 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.29□□□□□ -2.2
RFX3P48380 AC099513.1-201ENST00000490423 301 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RNA5SP61-201ENST00000516453 100 ntBASIC1.29□□□□□ -2.2
RFX3P48380 RNU2-34P-201ENST00000516534 121 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.29□□□□□ -2.2
RFX3P48380 MTND2P38-201ENST00000522536 667 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.29□□□□□ -2.2
RFX3P48380 AC025423.5-201ENST00000550230 219 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AL157687.1-201ENST00000554853 619 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AL118558.2-201ENST00000556294 238 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AL160236.1-201ENST00000556317 195 ntBASIC1.29□□□□□ -2.2
RFX3P48380 HMGB1P33-201ENST00000563485 527 ntBASIC1.29□□□□□ -2.2
RFX3P48380 PRR13P7-201ENST00000605538 430 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AC092807.2-201ENST00000609367 243 ntBASIC1.29□□□□□ -2.2
RFX3P48380 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.29□□□□□ -2.2
RFX3P48380 AC022079.1-201ENST00000621546 602 ntBASIC1.29□□□□□ -2.2
RFX3P48380 MIR6863-201ENST00000636112 90 ntBASIC1.29□□□□□ -2.2
RFX3P48380 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.29□□□□□ -2.2
RFX3P48380 ZNF209P-201ENST00000593450 2304 ntBASIC1.29□□□□□ -2.2
RFX3P48380 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
RFX3P48380 AL159152.1-201ENST00000635019 2587 ntBASIC1.28□□□□□ -2.2
RFX3P48380 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms