Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MTND1P11-201ENST00000456661 876 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC079804.2-201ENST00000490376 200 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.87□□□□□ -2.11
TNFRSF4P43489 SNORA31.11-201ENST00000516528 139 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 SNORA20.3-201ENST00000516880 132 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 RNA5SP454-201ENST00000517231 127 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC078795.3-201ENST00000602913 472 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AL022345.1-201ENST00000607292 135 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AL162373.1-201ENST00000620433 407 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC084768.2-201ENST00000622736 221 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
TNFRSF4P43489 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
TNFRSF4P43489 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 Y_RNA.301-201ENST00000364990 103 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 RNA5SP190-201ENST00000365222 118 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 RNA5SP37-201ENST00000365420 130 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 RNU6-306P-201ENST00000384617 107 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 MIR9-3-201ENST00000385084 90 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 MIR548F5-201ENST00000408421 86 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 RNA5SP201-201ENST00000410316 124 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 BX510359.4-201ENST00000423750 193 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AL645568.3-201ENST00000433683 316 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 RPL23AP7-203ENST00000449021 469 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC091874.1-201ENST00000511402 339 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC046134.1-201ENST00000514454 666 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 MIR449C-201ENST00000516047 92 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 RNU6-250P-201ENST00000516958 103 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 AL121579.1-201ENST00000555129 305 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC109446.1-201ENST00000566172 220 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 MIR548S-201ENST00000581352 82 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 POLR3GP2-201ENST00000588366 668 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 Z98751.3-201ENST00000604447 521 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC124303.1-201ENST00000605703 360 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC019193.3-201ENST00000609144 554 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 AL133215.3-201ENST00000609801 448 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
TNFRSF4P43489 AC009487.4-201ENST00000624969 3585 ntBASIC1.86□□□□□ -2.11
TNFRSF4P43489 Y_RNA.123-201ENST00000363338 102 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 SNORA72.1-201ENST00000363485 129 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 U3.9-201ENST00000363823 204 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 Y_RNA.184-201ENST00000363884 108 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 RNU11-3P-201ENST00000391111 133 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
TNFRSF4P43489 MIR1283-2-201ENST00000408621 87 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 AL353689.1-201ENST00000438895 199 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AL353572.1-201ENST00000442490 417 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 RNA5SP233-201ENST00000459153 113 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AC090255.1-201ENST00000495779 349 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AC103851.1-201ENST00000506833 274 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 RNA5SP490-201ENST00000517141 136 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 RNU1-54P-201ENST00000517181 120 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 AP005660.1-201ENST00000522972 293 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 CYP4A27P-201ENST00000567218 190 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 uc_338.5-201ENST00000611839 155 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.85□□□□□ -2.11
TNFRSF4P43489 MIR6128-201ENST00000615528 109 ntBASIC1.85□□□□□ -2.11
TNFRSF4P43489 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
TNFRSF4P43489 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
TNFRSF4P43489 RNU1-58P-201ENST00000362413 163 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 RNU6-234P-201ENST00000365229 104 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AL627390.1-201ENST00000396055 340 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 PDCL2P1-201ENST00000419302 352 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC108667.1-201ENST00000428618 249 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 MTND2P29-201ENST00000438595 412 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.84□□□□□ -2.11
TNFRSF4P43489 MTND1P17-201ENST00000448961 204 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC107399.1-201ENST00000451226 265 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 RPL23AP3-201ENST00000453844 468 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 RPS29P27-201ENST00000463711 170 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 HMGN1P12-201ENST00000499125 195 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC005741.1-201ENST00000511094 432 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC108729.3-201ENST00000513484 108 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.84□□□□□ -2.11
TNFRSF4P43489 ACA59.1-201ENST00000515966 143 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.84□□□□□ -2.11
TNFRSF4P43489 GNAI2P1-201ENST00000541815 315 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 MIR4255-201ENST00000579351 72 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC243960.4-201ENST00000600532 288 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AL078605.1-201ENST00000603529 500 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC005034.5-201ENST00000604219 466 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms