Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AL356292.1-201ENST00000283110 373 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 RNU4-15P-201ENST00000362613 141 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 Y_RNA.48-201ENST00000362710 103 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 MTCYBP2-201ENST00000407745 171 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.43□□□□□ -2.02
SHMT1P34896 AL358453.1-201ENST00000422522 250 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 MTND4P28-201ENST00000426217 387 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.43□□□□□ -2.02
SHMT1P34896 RNU7-152P-201ENST00000458982 64 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 AC087477.1-201ENST00000465747 340 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 AC093303.1-201ENST00000514549 295 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 RNU6-264P-201ENST00000517134 104 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 IGLV3-17-201ENST00000519099 244 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 AL590705.4-201ENST00000532209 134 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.43□□□□□ -2.02
SHMT1P34896 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.43□□□□□ -2.02
SHMT1P34896 AC023824.2-201ENST00000566185 400 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.43□□□□□ -2.02
SHMT1P34896 AL138963.2-201ENST00000605137 226 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 AC005520.5-201ENST00000613926 164 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 MIR203B-201ENST00000636080 86 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 ZNF355P-201ENST00000427301 3216 ntBASIC2.43□□□□□ -2.02
SHMT1P34896 RNY1P16-201ENST00000363063 111 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 Y_RNA.187-201ENST00000363918 113 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 Y_RNA.315-201ENST00000365117 102 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 SNORA80E-201ENST00000384744 137 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 MIR95-201ENST00000385072 81 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 U8.13-201ENST00000390842 128 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.42□□□□□ -2.02
SHMT1P34896 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.42□□□□□ -2.02
SHMT1P34896 AC011753.1-201ENST00000451001 220 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 MTCO3P10-201ENST00000455912 772 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 snoU13.30-201ENST00000458951 104 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 AF186996.7-201ENST00000492781 209 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 AC145146.1-201ENST00000496370 254 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 RNU7-175P-201ENST00000515915 61 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.42□□□□□ -2.02
SHMT1P34896 MIR4769-201ENST00000584126 77 ntBASIC2.42□□□□□ -2.02
SHMT1P34896 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.42□□□□□ -2.02
SHMT1P34896 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.42□□□□□ -2.02
SHMT1P34896 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
SHMT1P34896 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SHMT1P34896 AC131280.1-202ENST00000624067 4211 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT1P34896 MTND5P10-201ENST00000603719 1809 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 Y_RNA.146-201ENST00000363549 102 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 SNORD115-32-201ENST00000364079 82 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 RNU6-1032P-201ENST00000384100 107 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 RNU6-890P-201ENST00000384121 107 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 MIR144-201ENST00000384886 86 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 MIR524-201ENST00000385242 87 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 RNA5SP201-201ENST00000410316 124 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 RPS26P42-201ENST00000413485 326 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AF228730.4-201ENST00000421457 183 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT1P34896 IFNA11P-201ENST00000446352 526 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 OR2AQ1P-201ENST00000451972 200 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.41□□□□□ -2.02
SHMT1P34896 RPL30P10-201ENST00000488148 337 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AC068781.1-201ENST00000488231 618 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 RPL17P19-201ENST00000489069 552 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.41□□□□□ -2.02
SHMT1P34896 RNU6-237P-201ENST00000515985 71 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AC121758.2-201ENST00000553271 193 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AC015712.3-201ENST00000559380 164 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AL133255.1-201ENST00000606374 441 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AC005014.2-201ENST00000607795 599 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 RMST_6.1-201ENST00000611980 203 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.41□□□□□ -2.02
SHMT1P34896 PCGEM1.1-201ENST00000613431 131 ntBASIC2.41□□□□□ -2.02
SHMT1P34896 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.41□□□□□ -2.02
SHMT1P34896 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.41□□□□□ -2.02
SHMT1P34896 AP006437.1-201ENST00000641440 3685 ntBASIC2.4□□□□□ -2.02
SHMT1P34896 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SHMT1P34896 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.4□□□□□ -2.03
SHMT1P34896 Y_RNA.11-201ENST00000362375 109 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 U3.9-201ENST00000363823 204 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 Y_RNA.460-201ENST00000384255 102 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 RNU6-1274P-201ENST00000384557 107 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 Y_RNA.535-201ENST00000384612 99 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 RNU6-700P-201ENST00000391043 107 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 MIR208B-201ENST00000401172 77 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT1P34896 snoU13.6-201ENST00000458785 104 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 AC104435.1-201ENST00000483483 166 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT1P34896 RNU6-470P-201ENST00000515954 104 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 SNORA48.11-201ENST00000517015 89 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 AC104581.2-201ENST00000572227 430 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 MIR5701-3-201ENST00000578890 82 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 MIR5701-1-201ENST00000585138 82 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 CYP2C61P-201ENST00000604072 290 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 AL355297.2-201ENST00000604792 129 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 MIR6895-201ENST00000613497 78 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 MIR5701-2-201ENST00000615634 82 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 AC090574.1-201ENST00000623186 233 ntBASIC2.4□□□□□ -2.03
SHMT1P34896 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.4□□□□□ -2.03
SHMT1P34896 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms