Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 AC245297.2-201ENST00000610119 565 ntBASIC0□□□□□ -2.41
SDC4P31431 AL450472.1-202ENST00000637286 180 ntBASIC0□□□□□ -2.41
SDC4P31431 RNU6-462P-201ENST00000362659 105 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 RNY4P16-201ENST00000364768 94 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 Y_RNA.311-201ENST00000365068 96 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 SNORA36A-201ENST00000384221 132 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 RNU6-793P-201ENST00000384233 104 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 MIR660-201ENST00000385235 97 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0.01□□□□□ -2.41
SDC4P31431 MIR300-201ENST00000401138 83 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC019070.1-201ENST00000415008 1024 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC007283.2-201ENST00000424739 197 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC078809.1-201ENST00000427601 140 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC-0.01□□□□□ -2.41
SDC4P31431 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.01□□□□□ -2.41
SDC4P31431 MTND3P25-201ENST00000509243 135 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC109810.1-201ENST00000534066 224 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC123904.2-201ENST00000548059 300 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC-0.01□□□□□ -2.41
SDC4P31431 SUB1P2-201ENST00000556401 297 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 TMF1P1-201ENST00000576058 373 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AL596327.1-201ENST00000603629 213 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 SNRPGP20-201ENST00000604477 205 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC091965.4-201ENST00000607691 587 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 AC006001.4-201ENST00000622243 395 ntBASIC-0.01□□□□□ -2.41
SDC4P31431 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-0.02□□□□□ -2.41
SDC4P31431 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-0.02□□□□□ -2.41
SDC4P31431 Y_RNA.112-201ENST00000363250 102 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 RNU6-224P-201ENST00000384055 107 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 MIR140-201ENST00000385282 100 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 RNU6-440P-201ENST00000390882 105 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 SNORA26.3-201ENST00000391119 136 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 RNA5SP504-201ENST00000410676 117 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.02□□□□□ -2.41
SDC4P31431 USP9YP11-201ENST00000427537 717 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 AC104332.1-201ENST00000440471 797 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-0.02□□□□□ -2.41
SDC4P31431 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-0.02□□□□□ -2.41
SDC4P31431 RNU2-10P-201ENST00000516375 211 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 RNU4-77P-201ENST00000516692 156 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC-0.02□□□□□ -2.41
SDC4P31431 AP003327.1-201ENST00000529684 127 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 AC073539.2-201ENST00000597113 165 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 AC144521.1-201ENST00000607148 956 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 RNU6-94P-201ENST00000607728 107 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 AL391903.3-201ENST00000612158 163 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 AL136317.1-201ENST00000612653 226 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 AC091925.1-201ENST00000623204 462 ntBASIC-0.02□□□□□ -2.41
SDC4P31431 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.02□□□□□ -2.41
SDC4P31431 RNU6-199P-201ENST00000362954 107 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 SNORD32A-201ENST00000364805 84 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 MIR613-201ENST00000385248 95 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 RNA5SP323-201ENST00000391094 133 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 CALM2P3-201ENST00000400429 449 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 RNU2-3P-201ENST00000410144 191 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 USP9YP21-201ENST00000420603 432 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC093850.1-201ENST00000454121 251 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 MTCO2P18-201ENST00000457151 658 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC-0.03□□□□□ -2.41
SDC4P31431 AC091874.1-201ENST00000511402 339 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC-0.03□□□□□ -2.41
SDC4P31431 AC107934.1-201ENST00000522215 217 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC022784.5-201ENST00000522241 437 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC013828.2-201ENST00000532487 235 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-0.03□□□□□ -2.41
SDC4P31431 MIR4667-201ENST00000578933 66 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 MIR3192-201ENST00000584920 77 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC012409.4-201ENST00000612923 249 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 AC073349.3-201ENST00000617616 186 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC-0.03□□□□□ -2.41
SDC4P31431 AL157786.1-207ENST00000627771 695 ntBASIC-0.03□□□□□ -2.41
SDC4P31431 RNU6-428P-201ENST00000362942 107 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 RNA5SP219-201ENST00000390940 113 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 MIR1283-1-201ENST00000408494 87 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 RPL31P35-201ENST00000431058 377 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.04□□□□□ -2.42
SDC4P31431 SNRPGP12-201ENST00000449481 213 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 RBBP4P6-201ENST00000508098 202 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 RNU6-1028P-201ENST00000517164 93 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 MTND4LP26-201ENST00000518144 282 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC-0.04□□□□□ -2.42
SDC4P31431 ADI1P3-201ENST00000549509 470 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-0.04□□□□□ -2.42
SDC4P31431 MIR5697-201ENST00000578045 78 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 BNIP3P26-201ENST00000600827 554 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 AC009994.1-201ENST00000606889 253 ntBASIC-0.04□□□□□ -2.42
SDC4P31431 AL445523.1-201ENST00000451184 1362 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 MIR330-201ENST00000362196 94 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 MIR411-201ENST00000362239 96 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 Y_RNA.46-201ENST00000362695 102 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 RNA5SP62-201ENST00000363457 110 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 RNU6-336P-201ENST00000364891 107 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 MIR549A-201ENST00000385268 96 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 MTND4P3-201ENST00000417829 541 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 AL356583.2-201ENST00000426536 280 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 AC245047.3-201ENST00000429428 127 ntBASIC-0.05□□□□□ -2.42
SDC4P31431 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.05□□□□□ -2.42
SDC4P31431 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms