Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.65□□□□□ -1.82
HIF3AQ9Y2N7 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.65□□□□□ -1.82
HIF3AQ9Y2N7 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.65□□□□□ -1.82
HIF3AQ9Y2N7 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HIF3AQ9Y2N7 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.65□□□□□ -1.82
HIF3AQ9Y2N7 RNU1-75P-201ENST00000347264 129 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 SNORD35B-201ENST00000363660 87 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 U8.7-201ENST00000364940 136 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 SNORA40.5-201ENST00000391061 128 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 MIR1251-201ENST00000408552 70 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 RPS29P2-201ENST00000479278 136 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 AC145146.1-201ENST00000496370 254 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 SNORA70.14-201ENST00000516205 110 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 SNORD33.1-201ENST00000516213 88 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 GNRHR2P1-201ENST00000555315 631 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 PARP1P2-201ENST00000556806 195 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 MIR8059-201ENST00000620427 81 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 AC006111.3-201ENST00000622137 383 ntBASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
HIF3AQ9Y2N7 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 AC018555.1-201ENST00000567548 1980 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 RNU6-1210P-201ENST00000363775 107 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 SNORD45.3-201ENST00000363836 72 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 Y_RNA.584-201ENST00000391090 114 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 RPL18P10-201ENST00000425606 538 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 RNU2-44P-201ENST00000516795 194 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 AC025627.2-201ENST00000576220 160 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 AC024614.2-201ENST00000577584 372 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 MIR4277-201ENST00000578298 84 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 AL020997.2-201ENST00000602607 184 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 AC006133.1-201ENST00000617106 264 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 MIR548AY-201ENST00000617669 107 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 AC011944.2-201ENST00000624440 683 ntBASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HIF3AQ9Y2N7 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 RNU6-655P-201ENST00000362858 107 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 Y_RNA.124-201ENST00000363339 93 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 SNORD6-201ENST00000365444 73 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 AC068538.1-201ENST00000376856 336 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 MIR548B-201ENST00000385247 97 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 Z82209.1-201ENST00000422141 2135 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 RNU6-168P-201ENST00000516189 101 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 Y_RNA.757-201ENST00000578934 114 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 MIR5688-201ENST00000580619 83 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 CENPCP1-201ENST00000533085 2578 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 IPO8P1-201ENST00000455509 3109 ntBASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HIF3AQ9Y2N7 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AC026241.1-201ENST00000517873 2142 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AL353746.1-201ENST00000566293 6881 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 U8.1-201ENST00000362843 134 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 RNU6-144P-201ENST00000383951 107 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 RNU1-57P-201ENST00000384491 166 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 U8.12-201ENST00000384701 133 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 SNORA36B-201ENST00000410438 131 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 Y_RNA.630-201ENST00000411370 108 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AL139281.1-201ENST00000422120 335 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AL365496.1-201ENST00000426885 215 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AL445584.1-201ENST00000431451 330 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 RPS4XP2-201ENST00000458402 793 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 RNU6-1061P-201ENST00000516530 99 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 HSPE1P18-201ENST00000517602 280 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AC133485.4-201ENST00000561835 220 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 AC138907.4-201ENST00000570107 226 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 MIR4644-201ENST00000579929 84 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms