Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC010531.2-201ENST00000465012 153 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA2Q9Y261 ACA59.1-201ENST00000515966 143 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA2Q9Y261 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA2Q9Y261 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA2Q9Y261 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 TCL6_2.1-201ENST00000615162 119 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 AC098657.3-201ENST00000620434 263 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 AC009033.1-201ENST00000624279 431 ntBASIC1.71□□□□□ -2.14
FOXA2Q9Y261 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 MTND5P6-201ENST00000422338 1798 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.89-201ENST00000363031 102 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 MIR517A-201ENST00000385001 87 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 SNORA3.2-201ENST00000408221 125 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 MIR1283-1-201ENST00000408494 87 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 DAP3P1-201ENST00000441522 278 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AL357134.1-201ENST00000445848 426 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 RPL23AP7-203ENST00000449021 469 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 RPL23AP75-201ENST00000491601 451 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 HMGB3P17-201ENST00000504195 649 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC008549.1-201ENST00000512900 643 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 MTND1P5-201ENST00000517906 940 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC116312.1-201ENST00000606841 314 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AC090617.10-201ENST00000624308 134 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 AP000553.5-201ENST00000641933 54 ntBASIC1.7□□□□□ -2.14
FOXA2Q9Y261 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.295-201ENST00000364918 102 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 RNU6-418P-201ENST00000384035 107 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.453-201ENST00000384223 109 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.516-201ENST00000384541 124 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MIR549A-201ENST00000385268 96 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 RPL21P111-201ENST00000418453 477 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 Z98742.3-201ENST00000418637 326 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 DPH3P2-201ENST00000422618 250 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 C8orf59P1-201ENST00000429930 303 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MTCO1P44-201ENST00000441935 243 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MTCO3P8-201ENST00000453691 755 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MTND1P11-201ENST00000456661 876 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MTCO2P30-201ENST00000503662 364 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 RNU6-273P-201ENST00000516937 96 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 AC091544.4-201ENST00000555268 342 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MIR3672-201ENST00000584290 82 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 AC019193.3-201ENST00000609144 554 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 AC100810.6-201ENST00000638068 285 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MTND5P9-201ENST00000503854 1755 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
FOXA2Q9Y261 MTND4P5-201ENST00000435821 1374 ntBASIC1.69□□□□□ -2.14
FOXA2Q9Y261 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.212-201ENST00000364177 102 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 RNA5SP160-201ENST00000364866 120 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 RNA5SP138-201ENST00000365098 114 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 RNA5SP118-201ENST00000410385 109 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 RN7SKP223-201ENST00000410582 62 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 MTCO3P46-201ENST00000425787 232 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 HMGB1P18-201ENST00000438801 619 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC096638.1-201ENST00000444678 216 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC009237.7-201ENST00000447357 229 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC007215.1-201ENST00000464893 276 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC114982.1-201ENST00000469402 321 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 TRBV12-1-201ENST00000479785 344 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 MTCYBP18-201ENST00000501056 747 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 SNORA31.17-201ENST00000516953 127 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 SNORA44.1-201ENST00000517031 108 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC002984.1-201ENST00000591692 448 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC010900.2-201ENST00000604508 210 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC124303.1-201ENST00000605703 360 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC103810.8-201ENST00000607347 118 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 AC022513.1-201ENST00000624512 117 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 SCARNA4-201ENST00000629045 128 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 MIR3662-201ENST00000637030 95 ntBASIC1.68□□□□□ -2.14
FOXA2Q9Y261 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA2Q9Y261 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA2Q9Y261 SNORD50.1-201ENST00000362987 71 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 RNU6-534P-201ENST00000364877 106 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms