Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR3664-201ENST00000579074 99 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.4□□□□□ -2.34
SCN3AQ9NY46 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.4□□□□□ -2.34
SCN3AQ9NY46 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.4□□□□□ -2.34
SCN3AQ9NY46 MIR8054-201ENST00000620877 86 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AC011155.2-201ENST00000623202 216 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AC073544.1-201ENST00000600110 1595 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AC245060.5-201ENST00000610778 3293 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNA5SP259-201ENST00000365541 109 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU4-48P-201ENST00000365559 182 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU6-116P-201ENST00000384042 109 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU6-1029P-201ENST00000384109 107 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU6-692P-201ENST00000384496 107 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU6-950P-201ENST00000384651 107 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 MIR1-2-201ENST00000384961 85 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU2-70P-201ENST00000410718 179 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AC098934.3-201ENST00000430450 190 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 HMGN1P33-201ENST00000432945 451 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RPS20P10-201ENST00000451209 253 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU7-94P-201ENST00000459576 63 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RPS26P48-201ENST00000491713 339 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 HMGN1P12-201ENST00000499125 195 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 RNU6-685P-201ENST00000517088 95 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 EIF4A1P12-201ENST00000551910 141 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AC015688.6-201ENST00000577737 104 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 MIR5006-201ENST00000583027 110 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 AC008521.1-201ENST00000587471 187 ntBASIC0.4□□□□□ -2.35
SCN3AQ9NY46 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.4□□□□□ -2.35
SCN3AQ9NY46 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
SCN3AQ9NY46 Y_RNA.18-201ENST00000362461 102 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 RNU6-428P-201ENST00000362942 107 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 RNU6-1106P-201ENST00000390845 107 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 RPS29P13-201ENST00000402041 169 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.39□□□□□ -2.35
SCN3AQ9NY46 MTCO2P29-201ENST00000465212 189 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.39□□□□□ -2.35
SCN3AQ9NY46 RAP1BP2-201ENST00000478270 544 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 TRBVA-201ENST00000498804 316 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AC090572.1-201ENST00000519251 160 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AL590705.4-201ENST00000532209 134 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AL357312.1-201ENST00000603879 298 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AC105148.1-201ENST00000604961 409 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AC018714.1-201ENST00000605028 208 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 MIR8087-201ENST00000612745 78 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.39□□□□□ -2.35
SCN3AQ9NY46 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.39□□□□□ -2.35
SCN3AQ9NY46 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 RNU6-433P-201ENST00000363216 104 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 SNORA4.2-201ENST00000365313 147 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 RNU6-1065P-201ENST00000384513 106 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 MIR942-201ENST00000401111 86 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC006461.1-201ENST00000412637 326 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC073614.1-201ENST00000438690 650 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC073910.1-201ENST00000445047 438 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC010587.1-201ENST00000505809 469 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 SNORD111.1-201ENST00000516421 86 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 PCGEM1.1-201ENST00000613431 131 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC138649.3-201ENST00000622154 254 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AL589743.1-201ENST00000551932 2712 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC245047.3-201ENST00000429428 127 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 HMGN2P34-201ENST00000437647 269 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 RNU7-14P-201ENST00000459331 62 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AL049829.1-201ENST00000465411 156 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC104982.1-201ENST00000478775 574 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC016632.1-201ENST00000503994 196 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC105758.1-201ENST00000506038 399 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 SNORD79.1-201ENST00000516069 84 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 ACA64.5-201ENST00000516207 127 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 SNORA25.17-201ENST00000517184 124 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC022868.1-201ENST00000517767 391 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 MTATP6P15-201ENST00000527233 835 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC103996.1-201ENST00000555468 102 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC146944.4-201ENST00000602697 718 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 RPL17P51-201ENST00000605218 238 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AC040896.1-201ENST00000613819 479 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 AL157786.1-207ENST00000627771 695 ntBASIC0.38□□□□□ -2.35
SCN3AQ9NY46 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
SCN3AQ9NY46 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
SCN3AQ9NY46 RNU6-417P-201ENST00000384712 107 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 Y_RNA.576-201ENST00000384781 102 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 MIR625-201ENST00000385047 85 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AL133396.1-201ENST00000432048 687 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 HSFY7P-201ENST00000432672 318 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 HSFY8P-201ENST00000437934 318 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 MTCYBP1-201ENST00000454315 1119 ntBASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.37□□□□□ -2.35
SCN3AQ9NY46 AC104136.1-201ENST00000512969 394 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 402.9 ms